SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
☆23Jul 28, 2025Updated last year
Alternatives and similar repositories for SCAN2
Users that are interested in SCAN2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Feb 25, 2022Updated 4 years ago
- Toolkit for single-cell copy number analysis☆37Dec 15, 2025Updated 10 months ago
- PTa Analysis TOolkit☆20Oct 19, 2026Updated last week
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Single Cell Genomes with Allele Specificity☆14Oct 6, 2026Updated 3 weeks ago
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- ☆11Sep 13, 2024Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- Find CNVs in single cell sequencing data.☆22Apr 4, 2026Updated 6 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 4 years ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- Calling deletions using deep convolutional neural☆26Feb 12, 2020Updated 6 years ago
- MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with …☆13Dec 3, 2020Updated 5 years ago
- ☆10Nov 6, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Scripts and datasets for the analysis on convergent genome evolution of animal terrestrialisation☆16Sep 27, 2025Updated last year
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Jun 22, 2022Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- Single-cell copy number calling and event history reconstruction.☆29Sep 3, 2026Updated last month
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 3 years ago
- BISulfite-seq CUI Toolkit☆29Oct 5, 2026Updated 3 weeks ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆30Aug 12, 2026Updated 2 months ago
- ☆27Mar 27, 2024Updated 2 years ago
- Analysis software for Nanorate Sequencing (NanoSeq) experiments☆36Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- ☆13Nov 20, 2023Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆25Nov 9, 2022Updated 3 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- ☆24Apr 14, 2022Updated 4 years ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆12Oct 31, 2024Updated last year
- ☆14Jul 18, 2025Updated last year