SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
☆17Jul 28, 2025Updated 7 months ago
Alternatives and similar repositories for SCAN2
Users that are interested in SCAN2 are comparing it to the libraries listed below
Sorting:
- ☆18Feb 25, 2022Updated 4 years ago
- PTa Analysis TOolkit☆15Mar 2, 2026Updated 2 weeks ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 3 years ago
- Toolkit for single-cell copy number analysis☆30Dec 15, 2025Updated 3 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Dec 9, 2025Updated 3 months ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Apr 29, 2024Updated last year
- ☆21Dec 23, 2024Updated last year
- Analysis software for Nanorate Sequencing (NanoSeq) experiments☆31Dec 16, 2025Updated 3 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Mar 9, 2026Updated last week
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 7 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Calling deletions using deep convolutional neural☆24Feb 12, 2020Updated 6 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 7 months ago
- ☆10May 31, 2022Updated 3 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated last month
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Nov 13, 2024Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- ☆14Oct 9, 2025Updated 5 months ago
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Updated this week
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year
- Latex templates for submitting the NIH F31 grant☆15Sep 18, 2019Updated 6 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 8 months ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆37Apr 9, 2020Updated 5 years ago