parklab / SCAN2Links
SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
☆14Updated 3 weeks ago
Alternatives and similar repositories for SCAN2
Users that are interested in SCAN2 are comparing it to the libraries listed below
Sorting:
- Benchmarking long-read RNA-seq analysis tools☆27Updated 6 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last week
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Micro DNA identification☆24Updated 4 years ago
- ☆11Updated 2 years ago
- ☆23Updated 4 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Peak calling for 4C data☆13Updated 7 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated 7 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ChIA-PET Utilities☆12Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆19Updated 2 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Updated 4 years ago
- ☆12Updated 4 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- ☆31Updated 8 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- ☆25Updated last year