A flexible processor for sequencing reads
☆26Mar 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for matchbox
Users that are interested in matchbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 5, 2018Updated 7 years ago
- ☆19Jan 22, 2026Updated 2 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated last week
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- ATaRVa - Analysis of Tandem Repeat Variation☆17Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 7 months ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 4 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated last month
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Geneyx Analysis API☆12Apr 9, 2026Updated last week
- Python Primer Design Library☆14Mar 27, 2026Updated 3 weeks ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 4 months ago
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 6 months ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 11 months ago
- Creating alignment plots from bam files☆125Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- k-mers and the like☆22Apr 6, 2026Updated last week
- ☆11Dec 24, 2024Updated last year
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 8 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- ☆33Sep 11, 2025Updated 7 months ago
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dockerfiles to build Biopython instances☆28Aug 30, 2016Updated 9 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated last month
- ☆14Sep 11, 2023Updated 2 years ago
- Tool suite for HGVS variant descriptions☆48Feb 23, 2026Updated last month
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Mar 24, 2026Updated 3 weeks ago
- Langevin dynamics based tours of data, in Javascript with R wrapper.☆27Mar 8, 2026Updated last month