A flexible processor for sequencing reads
☆26Aug 28, 2026Updated this week
Alternatives and similar repositories for matchbox
Users that are interested in matchbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Aug 4, 2026Updated 3 weeks ago
- ☆11Sep 5, 2018Updated 7 years ago
- A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorit…☆17Jan 22, 2026Updated 7 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- ☆15Dec 22, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Rust implementation of SSHash☆19Updated this week
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last week
- Creating alignment plots from bam files☆132Updated this week
- kmer-counter based on kache-hash☆16Updated this week
- ☆27Jun 16, 2026Updated 2 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast approximate string searching☆164Aug 11, 2026Updated 2 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 4 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated last year
- ☆20Jan 13, 2026Updated 7 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆35Aug 11, 2026Updated 2 weeks ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated 2 weeks ago
- (Ready) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/latest/☆17Updated this week
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 7 months ago
- Fast sequence distance estimates☆31Updated this week
- A catalogue of available long read sequencing data analysis tools☆91Aug 24, 2026Updated last week
- Extremely fast and accurate Nanopore demultiplexing☆106Jul 18, 2026Updated last month
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated last month
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- ☆17Jan 6, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 11 months ago
- ☆37Jul 3, 2026Updated last month
- R package for benchmarking single cell analysis methods☆33Oct 4, 2023Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆69May 30, 2025Updated last year