A framework for keeping biomedical text mining result up-to-date
☆42Jul 11, 2020Updated 6 years ago
Alternatives and similar repositories for pubrunner
Users that are interested in pubrunner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 7 months ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated 2 years ago
- Framework for running text mining tools on latest publications. Main page at:☆15Jul 13, 2022Updated 4 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Mar 12, 2023Updated 3 years ago
- Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies☆15Feb 15, 2023Updated 3 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- BioBTree v2: An MCP-enabled biomedical graph database unifying 70+ datasets.☆19Updated this week
- NLP framework in python for entity recognition and relationship extraction☆115Dec 8, 2022Updated 3 years ago
- Tools for working with PubMed data.☆15Sep 26, 2020Updated 5 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- ☆18Mar 11, 2018Updated 8 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package code repo for Implementation of syntactic n-grams (sn-gram) extraction☆11Aug 6, 2023Updated 2 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.☆17Sep 11, 2016Updated 9 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- [NAACL(2019)] Generating Knowledge Graph Paths from Textual Definitions using Sequence-to-Sequence Models☆11Apr 27, 2022Updated 4 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆82Nov 2, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Apr 3, 2023Updated 3 years ago
- 🎬 analyzing three decades of movie data☆14Dec 9, 2022Updated 3 years ago
- ☆15Sep 20, 2019Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- ☆106May 16, 2018Updated 8 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- ☆24Nov 30, 2020Updated 5 years ago
- SciAI is an extension for the text editors like Google Docs to create structured semantic biomedical papers directly at the moment of wri…☆22Jul 11, 2023Updated 3 years ago
- ☆123May 2, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- BioAssay Research Database☆20Jan 29, 2019Updated 7 years ago
- JavaScript library for biological data visualization☆20Oct 12, 2018Updated 7 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 4 years ago
- Create playlists in Spotify using Python, libspotify, and pyspotify.☆19Dec 13, 2013Updated 12 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Oct 6, 2022Updated 3 years ago