LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms
☆24Aug 20, 2024Updated last year
Alternatives and similar repositories for LexMapr
Users that are interested in LexMapr are comparing it to the libraries listed below
Sorting:
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated 11 months ago
- Data ingest application for Monarch Initiative knowledge graph using Koza☆21Feb 10, 2026Updated 2 weeks ago
- Compositional Dietary Nutrition Ontology☆14Feb 15, 2026Updated 2 weeks ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- A registry of Knowledge Graphs, their data sources, and the ways they fit together.☆20Updated this week
- Code that parses datasets from various sources and converts them to load graph databases.☆16Feb 19, 2026Updated last week
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineer☆116Feb 13, 2026Updated 2 weeks ago
- The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of tex…☆210Feb 3, 2026Updated 3 weeks ago
- ☆23Feb 12, 2026Updated 2 weeks ago
- ☆40Sep 14, 2016Updated 9 years ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆27Sep 17, 2025Updated 5 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Aug 26, 2024Updated last year
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 7 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated last month
- The purpose of the Demo App is to test the App-Connect experience.☆10May 5, 2025Updated 9 months ago
- Soil Sample and Soil Profile Datasets: an Open Compilation☆23Jun 18, 2025Updated 8 months ago
- SeqSero2☆39Oct 1, 2025Updated 5 months ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- An ontology database for crops' traits with their variables☆21Apr 9, 2025Updated 10 months ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS☆10Oct 31, 2018Updated 7 years ago
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated 3 weeks ago
- Material for a workshop on reproducible science with R and RStudio☆14May 22, 2022Updated 3 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- An open-source project for building interactive, data-driven restaurant maps for any city. This repo contains the code of the London Food…☆32Feb 10, 2026Updated 2 weeks ago
- Adapted OS for e-ink tablets - allows to use work-related apps with no harm for eyes☆11May 17, 2020Updated 5 years ago
- ☆11May 25, 2024Updated last year
- Ontology lifecycle management☆301Feb 21, 2026Updated last week
- A framework for keeping biomedical text mining result up-to-date☆42Jul 11, 2020Updated 5 years ago
- Integrated OBO ontology store☆48Feb 13, 2026Updated 2 weeks ago
- Github mirror of MediaWiki extension CentralNotice - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Dev…☆15Updated this week