Alternatives and similar repositories for RNA_mapping

Users that are interested in RNA_mapping are comparing it to the libraries listed below

• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• pyrevo / ClusterScan
  ClusterScan, search for clusters of features in a given annotation.
  ☆11Updated 4 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• NCBI-Hackathons / Virus_Detection_SRA
  ☆10Updated 8 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• brwnj / umitools
  Tools to handle reads sequenced with unique molecular identifiers (UMIs).
  ☆30Updated 8 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆42Updated last week
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆40Updated 8 years ago
• vsbuffalo / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Updated 13 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 8 years ago
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆69Updated 4 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆25Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• friedue / course_RNA-seq2017
  ☆13Updated 8 years ago
• smped / ngsReports
  ☆23Updated 3 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 7 years ago
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆30Updated 5 years ago
• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• s-andrews / BamQC
  Mapped QC analysis program
  ☆43Updated 7 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• datacarpentry / rnaseq-data-analysis-ARCHIVED
  ☆10Updated 10 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year