pnnl / hundo
Snakemake-based amplicon processing protocol for 16S and ITS sequences.
☆14Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for hundo
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- ☆26Updated 8 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆43Updated this week
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- FAST is an Amplicon Sequencing Toolbox v1.2☆9Updated 6 years ago
- Modular snakemake workflow for assembly-based metagenomics☆10Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 6 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- functions for analyzing phyloseq data