pnnl / hundo
Snakemake-based amplicon processing protocol for 16S and ITS sequences.
β14Updated last year
Alternatives and similar repositories for hundo
Users that are interested in hundo are comparing it to the libraries listed below
Sorting:
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated last year
- Working with the outputs of sourmash in Rβ27Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of micβ¦β24Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.β23Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiomeβ25Updated 11 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annβ¦β26Updated 2 years ago
- Maximum Likelihood Amplicon Pipelineβ22Updated 11 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalogβ20Updated 3 years ago
- Handy tools for Microbiome analysis in Rβ18Updated 5 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemakeβ47Updated 3 weeks ago
- Tools for extracting individual genomes from metagenomesβ17Updated last year
- β27Updated last year
- β23Updated 6 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeqβ11Updated 9 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- β22Updated 2 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Labβ11Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β21Updated last year
- Microbiome profilingβ16Updated last week
- Phylogenetic Organization of Metagenomic Signals (POMS)β19Updated 2 years ago
- β20Updated 3 months ago
- Implementation of Krona to QIIME2β16Updated last year
- Metagenomic AnalySis with QUantitative pipElineβ12Updated 6 years ago
- Protein Alignment and Detection Interfaceβ61Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBIβ29Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomesβ29Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)β22Updated 10 months ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.β15Updated 2 years ago