Alternatives and similar repositories for hundo

Users that are interested in hundo are comparing it to the libraries listed below

• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 4 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 3 months ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 months ago
• aomlomics / tourmaline
  Amplicon sequence processing workflow using QIIME 2 and Snakemake
  ☆47Updated last week
• qunfengdong / BLCA
  ☆35Updated last year
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆28Updated last year
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• qiime2 / q2-dada2
  QIIME 2 plugin wrapping DADA2
  ☆21Updated last week
• Askarbek-orakov / ASAR
  Advanced metagenomic Sequence Analysis in R
  ☆15Updated 6 years ago
• reptalex / phylofactor
  ☆27Updated last year
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆95Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆84Updated last week
• borenstein-lab / burrito
  A visualization tool for exploratory data analysis of metagenomic data
  ☆37Updated 3 years ago
• aghozlane / masque
  Metagenomic AnalySis with QUantitative pipEline
  ☆12Updated 6 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 4 months ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last year
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 3 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 6 months ago
• compmetagen / micca
  micca - MICrobial Community Analysis
  ☆20Updated 5 years ago
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 4 years ago