pnnl / hundoLinks
Snakemake-based amplicon processing protocol for 16S and ITS sequences.
☆13Updated last year
Alternatives and similar repositories for hundo
Users that are interested in hundo are comparing it to the libraries listed below
Sorting:
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- Tools for visualising microbial community amplicon data☆69Updated 2 months ago
- ☆35Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- QIIME 2 plugin wrapping DADA2☆21Updated last month
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last month
- R We There Yet?☆31Updated 6 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- micca - MICrobial Community Analysis☆20Updated 5 years ago
- Fungal Genome Mapping Pipeline☆18Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- ☆28Updated last year
- Working with the outputs of sourmash in R☆27Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- ☆67Updated 9 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago