Alternatives and similar repositories for hundo:

Users that are interested in hundo are comparing it to the libraries listed below

• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 3 years ago
• reptalex / phylofactor
  ☆26Updated last year
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• Askarbek-orakov / ASAR
  Advanced metagenomic Sequence Analysis in R
  ☆15Updated 6 years ago
• snayfach / IGGsearch
  Metagenomic species profiling with enhanced coverage of the human gut microbiome
  ☆25Updated 10 months ago
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated 2 years ago
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 10 months ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 4 years ago
• merenlab / MerenLab-workflows
  A repository with scripts to run pipeline that are commonly used in the Meren Lab
  ☆11Updated 7 years ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆26Updated last year
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆28Updated 6 years ago
• aomlomics / tourmaline
  Amplicon sequence processing workflow using QIIME 2 and Snakemake
  ☆45Updated last month
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆28Updated last year
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆47Updated 11 months ago
• tanaes / snakemake_assemble
  Modular snakemake workflow for assembly-based metagenomics
  ☆10Updated 7 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last month
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last month
• sharpton / shotmap
  A Shotgun Metagenome Annotation Pipeline
  ☆23Updated 8 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆13Updated 3 years ago