Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
☆15Oct 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for biotext
Users that are interested in biotext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Oct 23, 2026Updated last week
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Oct 23, 2026Updated last week
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- Text mining cancer biomarkers for the CIVIC database☆23Oct 23, 2026Updated last week
- A framework for keeping biomedical text mining result up-to-date☆43Jul 11, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An end-to-end open-source data stack for crawling and visualizing real estate data, facilitating insights into market trends.☆15Mar 16, 2026Updated 7 months ago
- Research pipeline for exploring clinically relevant genomic variants☆18Jul 20, 2026Updated 3 months ago
- PhenoTagger☆67Jan 24, 2024Updated 2 years ago
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 4 years ago
- Text mining for pharmacogenomic associations for PharmGKB☆28Nov 4, 2022Updated 3 years ago
- MuSiCa - Mutational Signatures in Cancer☆22Dec 23, 2023Updated 2 years ago
- NIMs powershell for launching local AI microservices and open-stack model templates☆13May 9, 2025Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- Script to extract highly probable bots for further analysis☆15Sep 13, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tutorial on survival modeling with omics data☆12May 6, 2026Updated 5 months ago
- ☆11May 17, 2018Updated 8 years ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆31Updated this week
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- ☆12Aug 24, 2022Updated 4 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Oct 3, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automatic generation of reviews of scientific papers☆30Apr 3, 2025Updated last year
- ☆10Dec 8, 2021Updated 4 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated last year
- 研一深度学习课程作业 Bi-LSTM + Attention （nice code）☆11Jan 13, 2020Updated 6 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago
- Flame: Functional enrichment analysis using multiple gene lists☆13May 21, 2025Updated last year
- R package for viewing mutation needle lollipop plot widgets☆12Apr 18, 2018Updated 8 years ago
- ☆11Nov 19, 2020Updated 5 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of …☆12Oct 22, 2026Updated last week
- Keyword Extraction for Pathology Reports with BERT☆12Sep 2, 2020Updated 6 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Curated list of resources for variant prioritization☆16Nov 18, 2025Updated 11 months ago
- ☆10Feb 17, 2023Updated 3 years ago
- When Expectations Meet Reality: Realistic Unit Testing in R☆12Jul 11, 2024Updated 2 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago