Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
☆15Jun 10, 2024Updated last year
Alternatives and similar repositories for biotext
Users that are interested in biotext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Apr 3, 2023Updated 2 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 3 months ago
- Research pipeline for exploring clinically relevant genomic variants☆16Updated this week
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆30Updated this week
- An end-to-end open-source data stack for crawling and visualizing real estate data, facilitating insights into market trends.☆15Mar 16, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Script to extract highly probable bots for further analysis☆15Sep 13, 2017Updated 8 years ago
- Text mining for pharmacogenomic associations for PharmGKB☆28Nov 4, 2022Updated 3 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated 11 months ago
- 研一深度学习课程作业 Bi-LSTM + Attention （nice code）☆10Jan 13, 2020Updated 6 years ago
- Official PyTorch implementation of PlaneMVS ( https://arxiv.org/abs/2203.12082 ) , a 3D plane reconstruction framework leveraging multi-v…☆18Nov 13, 2025Updated 4 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated 4 months ago
- NGS duplicate marking☆19Apr 6, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- ☆12Aug 24, 2022Updated 3 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- ☆10Jan 25, 2019Updated 7 years ago
- ☆13Jun 6, 2024Updated last year
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- ☆23Aug 17, 2025Updated 7 months ago
- A framework for keeping biomedical text mining result up-to-date☆42Jul 11, 2020Updated 5 years ago
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ☆11Dec 8, 2021Updated 4 years ago
- When Expectations Meet Reality: Realistic Unit Testing in R☆12Jul 11, 2024Updated last year
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- A python interface for the CIViC db application☆11Feb 19, 2026Updated last month
- ☆11Jul 8, 2024Updated last year
- Keyword Extraction for Pathology Reports with BERT☆12Sep 2, 2020Updated 5 years ago
- Implementing DBSCAN using numpy and pytorch☆11Aug 21, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Curated list of resources for variant prioritization☆14Nov 18, 2025Updated 4 months ago
- Simple utilities to manage R environments☆16Apr 19, 2024Updated last year
- Retrieve GitHub Stars for any Repository☆14May 31, 2020Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data acro…☆18Jan 10, 2026Updated 2 months ago
- Clinical Text Mining☆12Aug 15, 2017Updated 8 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Apr 7, 2017Updated 8 years ago