jakelever / biotextLinks
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
☆14Updated last year
Alternatives and similar repositories for biotext
Users that are interested in biotext are comparing it to the libraries listed below
Sorting:
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆18Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- ☆20Updated 2 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated 2 years ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆27Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 4 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- PhenoTagger☆64Updated last year
- ☆25Updated last year
- Simulate patients with rare genetic conditions☆24Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆39Updated 3 years ago
- ☆26Updated 4 years ago
- Research pipeline for exploring clinically relevant genomic variants☆16Updated last week
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆28Updated 8 months ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 8 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- ☆15Updated 6 months ago
- ☆24Updated 4 years ago
- ☆31Updated last year
- Repo for downloading and storing OMIM data☆19Updated 9 years ago
- A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint☆21Updated 2 years ago
- A metadata commons to store research software metadata☆44Updated last week
- ☆42Updated 5 years ago
- Batch download articles based on PMID (Pubmed ID)☆131Updated 2 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆63Updated 2 months ago