jakelever / biotext
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
☆14Updated 8 months ago
Alternatives and similar repositories for biotext:
Users that are interested in biotext are comparing it to the libraries listed below
- Retrieve and process PubTator annotations☆44Updated last year
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated last year
- ☆24Updated 4 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆18Updated last year
- Text mining for pharmacogenomic associations for PharmGKB☆26Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- ☆15Updated last year
- ☆40Updated 4 years ago
- R package with netDx software and data for examples☆12Updated last year
- A fast and programmatic MELODI☆16Updated 9 months ago
- Search the biomedical literature for protein interactions and protein associations☆11Updated last year
- Python library for working with BioC files☆13Updated 6 years ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆23Updated 5 months ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆36Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆41Updated 3 months ago
- ☆24Updated 4 years ago
- ☆22Updated last year
- PhenoTagger☆55Updated last year
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆51Updated this week
- Literature mining for T cell relations☆23Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 3 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- ☆20Updated 3 months ago
- A metadata commons to store research software metadata☆40Updated last week
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 7 months ago
- A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint☆20Updated last year
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 2 months ago