Alternatives and similar repositories for biotext:

Users that are interested in biotext are comparing it to the libraries listed below

• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• jakelever / pgxmine
  Text mining for pharmacogenomic associations for PharmGKB
  ☆26Updated 2 years ago
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated 2 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• OntoGene / OGER
  ☆24Updated 4 years ago
• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆18Updated 2 years ago
• ncbi / tmVar3
  ☆17Updated last year
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆16Updated 8 years ago
• greenelab / preprint-similarity-search
  A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint
  ☆20Updated last year
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 7 months ago
• MRCIEU / MELODI-Presto
  A fast and programmatic MELODI
  ☆16Updated last year
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 9 months ago
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆24Updated 2 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated last month
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• biocypher / clinical-knowledge-graph
  ☆17Updated 10 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated last week
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• ncbi-nlp / pubtator-gpt
  ☆23Updated last year
• lasigeBioTM / K-RET
  K-RET: Knowledgeable Biomedical Relation Extraction System
  ☆10Updated last month
• ncbi / GNorm2
  ☆20Updated last year
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago