For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.
☆66Aug 15, 2016Updated 10 years ago
Alternatives and similar repositories for microbiome-tools
Users that are interested in microbiome-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- For anyone who wants to share and compare their microbiome data.☆28Jun 17, 2016Updated 10 years ago
- useful tools for manipulating uBiome information☆45Dec 7, 2017Updated 8 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Jun 12, 2019Updated 7 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- Biobakery formulae for the Homebrew package manager☆11Sep 9, 2019Updated 7 years ago
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- Print barcodes in R☆10Oct 27, 2020Updated 6 years ago
- ☆40Sep 14, 2016Updated 10 years ago
- A processing pipeline for the summarization, normalization and diagnostics of mass spectrometry–based metabolomics data.☆10Jan 17, 2026Updated 9 months ago
- MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies☆13Jan 31, 2026Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- Generates a set of plots showing ubiome data over time.☆13May 12, 2019Updated 7 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- American Gut open-access data and IPython notebooks☆135Mar 17, 2017Updated 9 years ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 90-day Biohacker Challenge: An open-sourced biohacking & quantified-self protocol☆11Sep 10, 2016Updated 10 years ago
- Zero-Inflated Beta Random Effect model☆30Mar 6, 2026Updated 7 months ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Dirichlet-Multinomial Bayesian Variable Selection☆14Oct 11, 2026Updated 2 weeks ago
- A visualization tool for exploratory data analysis of metagenomic data☆40Mar 22, 2022Updated 4 years ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 4 years ago
- A wrapper-library for reading openSNP data☆49Apr 4, 2018Updated 8 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Oct 17, 2017Updated 9 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 9 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 3 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 12 years ago