Alternatives and similar repositories for microbiome-tools

Users that are interested in microbiome-tools are comparing it to the libraries listed below

• ubiome-opensource / microbiome-data
  For anyone who wants to share and compare their microbiome data.
  ☆29Updated 9 years ago
• richardsprague / uBiome
  useful tools for manipulating uBiome information
  ☆45Updated 7 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 10 years ago
• biocore / American-Gut
  American Gut open-access data and IPython notebooks
  ☆125Updated 8 years ago
• arrogantrobot / 23andme2vcf
  convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
  ☆98Updated 6 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆24Updated 8 years ago
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆23Updated 2 years ago
• datacarpentry / shell-genomics
  Introduction to the Command Line for Genomics
  ☆67Updated last week
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• chapmanb / cloudbiolinux
  CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
  ☆257Updated last year
• blab / nextflu
  Real-time tracking of influenza evolution
  ☆88Updated 2 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 6 years ago
• sbotond / phylosim
  An R package for the Monte Carlo simulation of sequence evolution
  ☆18Updated 11 years ago
• quelopes / GeNNet
  Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.
  ☆10Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• tiagoantao / genomics-notebooks
  IPython notebooks to teach Genomics and Population Genetics
  ☆21Updated 8 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆18Updated 8 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 12 years ago
• SamStudio8 / chitin
  chitin: an awful shell for awful bioinformaticians
  ☆61Updated 5 years ago
• StoreyLab / edge
  R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
  ☆22Updated 6 years ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 8 years ago
• vsbuffalo / devnotes
  Vince Buffalo's devnotes — ½ TIL, ½ notebook
  ☆115Updated 9 years ago
• phageParser / phageParser
  A project to extract CRISPR information from open genetic data.
  ☆112Updated 5 years ago
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆43Updated 6 years ago
• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆85Updated 6 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 7 years ago
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago