fnl / medic
a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of science and am working as a consultant now, this project might need a new maintainer once PubMed changes its XML format. Heroes?
☆25Updated 9 years ago
Alternatives and similar repositories for medic:
Users that are interested in medic are comparing it to the libraries listed below
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 6 years ago
- Hive Plots in using Python & matplotlib!☆70Updated 6 years ago
- High throughput, pain-free big data pipelines.☆30Updated 7 years ago
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Updated 7 years ago
- Plot categorical heatmaps with seaborn☆18Updated 2 years ago
- The Clustergrammer interactive Jupyter notebook widget☆48Updated 2 years ago
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Framework for running text mining tools on latest publications. Main page at:☆14Updated 2 years ago
- Getting and publishing data on the web using Python.☆9Updated 8 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- ☆11Updated 2 years ago
- A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of …☆12Updated 3 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 4 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 6 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆127Updated last year
- Find target sites for the miRNAs in genomic sequences☆19Updated 7 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Updated 8 years ago
- ☆36Updated 7 years ago
- ☆15Updated 2 years ago
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 4 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- Vector space representation of genetic data☆36Updated 8 years ago
- Efficient handling of FASTQ files from Python☆50Updated 4 months ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago