Alternatives and similar repositories for medic

Users that are interested in medic are comparing it to the libraries listed below

• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• NCBI-Hackathons / PubRunner
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Updated 3 years ago
• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 7 years ago
• ericmjl / hiveplot
  Hive Plots in using Python & matplotlib!
  ☆71Updated 7 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 10 years ago
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆146Updated 5 years ago
• SuLab / mark2cure
  Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.
  ☆14Updated 3 years ago
• datasnakes / renv
  Creating virtual environments for R.
  ☆17Updated 6 years ago
• DataBiosphere / data-explorer
  ☆11Updated 3 years ago
• NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3
  ☆28Updated 7 years ago
• bgruening / docker-ipython-notebook
  IPython running in a docker container. This image can be used to integrate IPython into Galaxy
  ☆17Updated 9 years ago
• ericmjl / Circos
  ☆15Updated 3 years ago
• MaayanLab / clustergrammer-py
  A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of …
  ☆12Updated 4 years ago
• david-r-cox / Gene2vec
  Vector space representation of genetic data
  ☆36Updated 9 years ago
• broadinstitute / pywdl
  Python bindings for WDL
  ☆10Updated 8 years ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆30Updated 5 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• prashnts / metaRNA
  Find target sites for the miRNAs in genomic sequences
  ☆18Updated 8 years ago
• vjcitn / CSHstats
  R vignettes/pkgdown for elementary statistics for a summer course
  ☆14Updated last year
• MaayanLab / clustergrammer-widget
  The Clustergrammer interactive Jupyter notebook widget
  ☆47Updated 3 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 8 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• kokrah / HTShape
  Shape analysis of high-throughput data
  ☆19Updated 9 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆125Updated 2 years ago
• biokit / biokit
  Bioinformatics in Python
  ☆58Updated last year
• datduong / word2vec2compareGenes
  Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.
  ☆12Updated 8 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 months ago
• wenjiegroup / BiRen
  ☆13Updated 6 years ago