hu-ner / hunerLinks
Named Entity Recognition for biomedical entities
☆47Updated 2 years ago
Alternatives and similar repositories for huner
Users that are interested in huner are comparing it to the libraries listed below
Sorting:
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- ☆73Updated last year
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Python library for converting between BioNLP formats☆21Updated 2 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Updated 10 months ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- ☆91Updated 5 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆167Updated last year
- ☆35Updated 4 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- NCBI disease corpus - related resources☆28Updated 8 years ago
- BioELECTRA☆50Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆48Updated 4 years ago
- ☆25Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 2 months ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Updated 6 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Updated 9 years ago