hu-ner / hunerLinks
Named Entity Recognition for biomedical entities
☆48Updated 2 years ago
Alternatives and similar repositories for huner
Users that are interested in huner are comparing it to the libraries listed below
Sorting:
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 7 years ago
- Python library for converting between BioNLP formats☆22Updated 2 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- ☆74Updated last year
- Conversion from brat-flavored standoff to CoNLL format☆55Updated 4 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆172Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- ☆93Updated 6 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆136Updated last year
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- BioBert Pytorch☆116Updated 2 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated 2 years ago
- ☆122Updated 7 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- ☆232Updated 8 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- Code for AttentionMeSH☆17Updated 7 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆49Updated 5 years ago
- Tools for working with the S800 corpus☆11Updated 5 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- FOBIE dataset and code for Semi-Open Relation Extraction, applied to Biology for Computer-Aided Biomimetics.☆35Updated 5 years ago
- ☆25Updated 2 years ago
- ☆35Updated 4 years ago
- NCBI disease corpus - related resources☆30Updated 8 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Updated last year