Alternatives and similar repositories for civicmine

Users that are interested in civicmine are comparing it to the libraries listed below

• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆18Updated 2 years ago
• jakelever / pgxmine
  Text mining for pharmacogenomic associations for PharmGKB
  ☆26Updated 2 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated 2 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 9 months ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• WheelerLab / GWAS_QC
  ☆8Updated 7 years ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated 2 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆15Updated 6 years ago
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Updated 11 months ago
• elakatos / NeoepProcessing
  Collection of scripts for pre- and postprocessing neoantigen discovery calls.
  ☆9Updated 5 years ago
• NCBI-Hackathons / Bringing-the-Power-of-Synthetic-Data-Generation-to-the-Masses
  We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…
  ☆11Updated 5 years ago
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 5 years ago
• enricoferrero / TargetPred
  In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
  ☆18Updated 7 years ago
• SuLab / mark2cure
  Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.
  ☆14Updated 2 years ago
• shbrief / GenomicSuperSignature
  Interpretation of RNAseq experiments through robust, efficient comparison to public databases
  ☆16Updated 3 weeks ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 3 years ago
• ncbi / tmVar3
  ☆17Updated 2 years ago
• astrazeneca-cgr-publications / mantis-ml-release
  mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
  ☆29Updated last year