BaderLab / Towards-reliable-BioNERLinks
This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towards reliable named entity recognition in the biomedical domain".
☆15Updated 6 years ago
Alternatives and similar repositories for Towards-reliable-BioNER
Users that are interested in Towards-reliable-BioNER are comparing it to the libraries listed below
Sorting:
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆158Updated 2 years ago
- Named Entity Recognition for biomedical entities☆48Updated 2 years ago
- ☆74Updated last year
- Abbreviation definition dection library trained on PubMed abstracts☆50Updated 5 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 7 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 7 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆340Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- A near real-time named-entity recognizer☆62Updated 4 months ago
- Repository for student projects within biomedical text mining from Lund University☆56Updated 2 years ago
- ☆42Updated 5 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆200Updated last year
- Python library for work with BioCreative files☆13Updated 7 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Updated 3 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- ☆93Updated 6 years ago
- ☆35Updated 5 years ago
- ☆152Updated last year
- a module to calculate the MeSH similarity☆27Updated 3 years ago
- BioBert Pytorch☆116Updated 2 years ago