This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towards reliable named entity recognition in the biomedical domain".
☆15Jul 26, 2019Updated 6 years ago
Alternatives and similar repositories for Towards-reliable-BioNER
Users that are interested in Towards-reliable-BioNER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Apr 6, 2019Updated 7 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Apr 18, 2022Updated 4 years ago
- A Deep Learning Model for Protein Function Prediction☆18Jul 31, 2020Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 6 years ago
- ☆43Feb 26, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Nov 30, 2023Updated 2 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Feb 5, 2019Updated 7 years ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Mar 5, 2019Updated 7 years ago
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆43Apr 30, 2018Updated 8 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- ☆80Dec 20, 2023Updated 2 years ago
- Turku Event Extraction System☆147Mar 1, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- ☆11Dec 27, 2021Updated 4 years ago
- a Wordle clone for DOS☆15Feb 27, 2022Updated 4 years ago
- Web cards/apps describing peptides☆31Apr 26, 2023Updated 3 years ago
- Tools for working with the S800 corpus☆12Sep 17, 2020Updated 5 years ago
- ☆14May 22, 2023Updated 3 years ago
- ☆24May 16, 2023Updated 3 years ago
- Python library for working with BioC files☆13Mar 28, 2018Updated 8 years ago
- Html5 based webcam heart rate tracking☆16Dec 9, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A jupyter notebook with some examples of threading and multiprocessing☆10Feb 2, 2016Updated 10 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 7 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 3 years ago
- The source code for the API demo that we did in the OR2016 dev track☆14May 2, 2017Updated 9 years ago
- Open Source CAD PDM tool☆16Mar 23, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A browser extension providing Open Access bibliographical services☆18Dec 9, 2022Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆184Jul 7, 2023Updated 3 years ago
- Biologically RElevant VIrtual Staining☆12Dec 10, 2021Updated 4 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Jul 11, 2020Updated 6 years ago
- ☆14Jun 5, 2024Updated 2 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- ☆25Jun 12, 2023Updated 3 years ago