jakelever / biowordlists

Related projects ⓘ

Alternatives and complementary repositories for biowordlists

• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆41Updated 4 years ago
• jakelever / civicmine
  Text mining cancer biomarkers for the CIVIC database
  ☆22Updated last year
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆40Updated last year
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆23Updated 3 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆40Updated this week
• OntoGene / OGER
  ☆23Updated 3 years ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆45Updated 3 months ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 3 years ago
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆13Updated 5 months ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated last year
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 2 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 4 months ago
• maximilianh / pubMunch
  various tools to download, convert and process the full text of scientific articles
  ☆52Updated last year
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 4 years ago
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆20Updated last year
• larsjuhljensen / tagger
  ☆21Updated last year
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 3 years ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆34Updated 2 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆31Updated 7 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆36Updated last year
• EBISPOT / EFO-UKB-mappings
  ☆13Updated 5 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆43Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 4 years ago
• krassowski / drug-disease-profile-matching
  Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
  ☆16Updated 4 years ago
• ncbi / tmVar3
  ☆15Updated last year
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 3 years ago