jakelever / biowordlistsLinks
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
☆18Updated 2 years ago
Alternatives and similar repositories for biowordlists
Users that are interested in biowordlists are comparing it to the libraries listed below
Sorting:
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- Text mining cancer biomarkers for the CIVIC database☆22Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 9 months ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆24Updated 2 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated 2 years ago
- ☆17Updated 2 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated 11 months ago
- Retrieve and process PubTator annotations☆44Updated last year
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- ☆22Updated 2 years ago
- A python package for pathway visualization☆38Updated 4 years ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆38Updated 2 years ago
- A metadata commons to store research software metadata☆41Updated this week
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆49Updated 6 months ago
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- ☆11Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆56Updated 2 weeks ago
- ☆24Updated 4 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A Standard Database for Drug Repositioning☆19Updated 7 years ago
- Repo for downloading and storing OMIM data☆19Updated 8 years ago
- Phenotype comparison tools using semantic similarity.☆64Updated last year
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 years ago