An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.
☆17Dec 21, 2024Updated last year
Alternatives and similar repositories for awesome-reproducible-R
Users that are interested in awesome-reproducible-R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 3 months ago
- Framework for running text mining tools on latest publications. Main page at:☆15Jul 13, 2022Updated 3 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Mar 13, 2026Updated 3 weeks ago
- Short course on reproducible science: what, why, how☆22Jan 12, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 3 years ago
- Autonomous goal-directed iteration for Gemini CLI. Inspired by Karpathy's autoresearch. Modify → Verify → Keep/Discard → Repeat forever.☆27Mar 27, 2026Updated 2 weeks ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- A showcase based on the tutorial presented at ML@Enterprise Forum 2018 in Warsaw.☆12Oct 10, 2018Updated 7 years ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- Creating Debian Packages from CRAN Sources☆12Jul 1, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated last month
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- The BioJS MSA viewer wrapped into an R package☆12Sep 27, 2016Updated 9 years ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Feb 20, 2026Updated last month
- Flexible R Pipelines with Caching☆12Sep 1, 2018Updated 7 years ago
- A basic science lab framework aimed at reproducibility and lab management.☆14Mar 26, 2026Updated 2 weeks ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- A mobile-responsive demo flask website that includes a login page.☆25Nov 25, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 6 months ago
- RZabbix is an R wrapper for Zabbix API.☆12Nov 28, 2016Updated 9 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Three-Dimensional Vector Operations in R☆17Mar 11, 2024Updated 2 years ago
- R package to compute pagerank of CRAN packages☆10Mar 18, 2016Updated 10 years ago
- Solution to Kaggle Santa 2021 Challenge☆14Jan 18, 2022Updated 4 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Gene Expression Omnibus Analysis with Shiny☆41Jun 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 5 months ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Dec 2, 2022Updated 3 years ago
- Anonymous function creation in R and purrr☆14Jan 11, 2020Updated 6 years ago
- PyPI package for traversing extremely large FTP directory trees☆18Dec 18, 2017Updated 8 years ago
- ☆12Feb 1, 2026Updated 2 months ago