An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.
☆16Dec 21, 2024Updated last year
Alternatives and similar repositories for awesome-reproducible-R
Users that are interested in awesome-reproducible-R are comparing it to the libraries listed below
Sorting:
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 2 months ago
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- Framework for running text mining tools on latest publications. Main page at:☆14Jul 13, 2022Updated 3 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 7 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Feb 22, 2026Updated last week
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated 3 weeks ago
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- Flexible R Pipelines with Caching☆12Sep 1, 2018Updated 7 years ago
- A basic science lab framework aimed at reproducibility and lab management.☆13Dec 3, 2025Updated 3 months ago
- A mobile-responsive demo flask website that includes a login page.☆25Nov 25, 2025Updated 3 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 5 months ago
- Short course on reproducible science: what, why, how☆22Jan 12, 2025Updated last year
- R package for generalized linear mixed models☆11Sep 22, 2024Updated last year
- Creating Debian Packages from CRAN Sources☆12Jul 1, 2020Updated 5 years ago
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 3 years ago
- Conveniently issue messages, warnings, and errors☆12Jul 7, 2021Updated 4 years ago
- R package to compute pagerank of CRAN packages☆10Mar 18, 2016Updated 9 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- The BioJS MSA viewer wrapped into an R package☆12Sep 27, 2016Updated 9 years ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Feb 20, 2026Updated last week
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- A beginner-friendly framework for building and managing data analysis pipelines in R.☆18Dec 14, 2025Updated 2 months ago
- Syntax highlighter for R☆31Jan 17, 2019Updated 7 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- RStudio addin to search CRAN packages titles and descriptions☆35Mar 12, 2019Updated 6 years ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 6 years ago
- STAMPS 2018 course☆15Aug 8, 2018Updated 7 years ago
- Some binaries built for Ubuntu 18.04 (Pandoc and TeXLive)☆18Dec 21, 2023Updated 2 years ago
- Three-Dimensional Vector Operations in R☆17Mar 11, 2024Updated last year
- A set of tools for R that enhance reproducibility beyond package management☆39Updated this week
- R syntax for Atom☆29Feb 28, 2019Updated 7 years ago
- PyPI package for traversing extremely large FTP directory trees☆19Dec 18, 2017Updated 8 years ago
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated last year
- Gene Expression Omnibus Analysis with Shiny☆40Jun 2, 2022Updated 3 years ago
- R Package for making a directory of presentations☆14Dec 10, 2018Updated 7 years ago
- RStudio Connect API-driven Shiny application deployment example.☆23Nov 28, 2022Updated 3 years ago