Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association detection). First version has was published as part of the paper: Dieter Galea, Ivan Laponogov, Kirill Veselkov; Exploiting and assessing multi-source data for supervised biomedical named entity recognition, Bi…
☆18Mar 15, 2018Updated 8 years ago
Alternatives and similar repositories for biomedical_corpora
Users that are interested in biomedical_corpora are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A convolutional neural network model for relation extraction.☆12Mar 24, 2023Updated 3 years ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 4 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 7 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Dec 23, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Chinese electronic medical record named entity recognition☆12Dec 13, 2018Updated 7 years ago
- Unsupervised domain adaptation method for relation extraction☆18Jul 16, 2018Updated 8 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆346Nov 9, 2021Updated 4 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Sep 24, 2020Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 6 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Mar 12, 2023Updated 3 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Jul 27, 2015Updated 11 years ago
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- Python wrapper for UMLS REST API☆10Dec 17, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A smorgasbord architecture for coreference resolution in biomedical text☆10Apr 16, 2020Updated 6 years ago
- Remove and restore masks for layers that do not support masking☆16Jan 22, 2022Updated 4 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 4 years ago
- Medical Relations and Entities Extraction☆37Jun 21, 2022Updated 4 years ago
- An information extraction system for free-text eligibility criteria☆38Jan 12, 2019Updated 7 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- Repository for DISRPT2021 shared task☆16Sep 5, 2022Updated 3 years ago
- modules for Nepali language processing☆13Dec 31, 2017Updated 8 years ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- phenol: Phenotype ontology library☆26Jun 30, 2026Updated 2 months ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 5 years ago
- Named Entity Recognition in Nepali Language☆10Jan 12, 2023Updated 3 years ago
- This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that …☆12Updated this week
- Extracting scientific claims from biomedical abstracts (powered by AllenNLP)☆146Jun 2, 2021Updated 5 years ago
- mapped with CPT and ICD codes☆16Dec 7, 2015Updated 10 years ago
- ☆12Mar 12, 2022Updated 4 years ago
- Code corresponding to our paper "Leveraging Dependency Forest for Neural Medical Relation Extraction" at EMNLP 2019☆20Nov 26, 2020Updated 5 years ago
- Semantic prefix map registry☆14Jul 2, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parse the Drugs@FDA data into a postgres DB☆11Dec 8, 2022Updated 3 years ago
- Python application, generating parallel corpus for any language pairs, can be used for training nmt (Neural Machine Translation) systems☆12Dec 8, 2022Updated 3 years ago
- ☆12May 20, 2022Updated 4 years ago
- ☆12May 25, 2024Updated 2 years ago
- Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212☆12Jun 4, 2020Updated 6 years ago
- VAE+GAN