Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
☆28Aug 21, 2024Updated last year
Alternatives and similar repositories for txt2onto
Users that are interested in txt2onto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- ☆12Mar 1, 2025Updated last year
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 4 years ago
- LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms☆25Aug 20, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- reverse gene expression score☆16Sep 8, 2023Updated 2 years ago
- Data ingest application for Monarch Initiative knowledge graph using Koza☆24May 20, 2026Updated last week
- Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.☆12Jun 26, 2024Updated last year
- A motley crew of agents developed by the Monarch Initiative☆26Nov 17, 2025Updated 6 months ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 9 years ago
- A registry of Knowledge Graphs, their data sources, and the ways they fit together.☆26Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆33Mar 19, 2024Updated 2 years ago
- ☆24Nov 30, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Connect the dots in networks.☆20Aug 28, 2020Updated 5 years ago
- BabelNet (and WordNet) sense embedding trained with Word2Vec and FastText☆10Sep 3, 2019Updated 6 years ago
- Dockerfiles to build Biopython instances☆28Aug 30, 2016Updated 9 years ago
- ☆11Jul 31, 2019Updated 6 years ago
- ☆23May 21, 2026Updated last week
- A knowledge extraction tool that uses a large language model to extract semantic information from text☆30Jan 3, 2023Updated 3 years ago
- ☆26May 16, 2025Updated last year
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Mar 16, 2026Updated 2 months ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Courses & workshops led by members of the Krishnan Lab.☆24Sep 7, 2025Updated 8 months ago
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago
- tldr client for R☆20Dec 27, 2022Updated 3 years ago
- A fully-featured multi-source data pipeline for continuously extracting knowledge from COVID-19 data.☆21Jun 20, 2021Updated 4 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- cyREST examples for Python users.☆11Feb 20, 2018Updated 8 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Sep 5, 2016Updated 9 years ago
- Data Ingestion Pipeline for Monarch☆57Nov 23, 2022Updated 3 years ago
- Python toolkit for SSSOM mapping format☆62May 13, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 6 months ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- Adjacency-constrained hierarchical clustering of a similarity matrix☆16Nov 21, 2025Updated 6 months ago
- Text mining for pharmacogenomic associations for PharmGKB☆27Nov 4, 2022Updated 3 years ago
- Unified environment and Issue tracker for all IBL☆17Mar 19, 2026Updated 2 months ago
- SAveRUNNER (Searching off-lAbel dRUg aNd NEtwoRk) - a network-based approach for drug repurposing☆13Nov 27, 2024Updated last year
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago