Alternatives and similar repositories for M3C

Users that are interested in M3C are comparing it to the libraries listed below

• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆38Updated last month
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆80Updated last month
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆63Updated 4 years ago
• WandeRum / multiROC
  Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
  ☆34Updated 4 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 4 months ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 3 months ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆53Updated 4 months ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆80Updated last year
• NikNakk / forestmodel
  ☆44Updated last year
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• lucylgao / clusterpval
  ☆17Updated 2 years ago
• MSKCC-Epi-Bio / gnomeR
  Package to wrangle and visualize genomic data in R
  ☆26Updated 9 months ago
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆38Updated 4 years ago
• sahirbhatnagar / manhattanly
  ☆61Updated 4 years ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• neurogenomics / rworkflows
  Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
  ☆80Updated 4 months ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 4 years ago
• traversc / trqwe
  Performance oriented statistical metrics and utility functions in R
  ☆30Updated 4 years ago
• SISBID / Unsupervised-Learning
  ☆52Updated 2 weeks ago
• CRI-iAtlas / shiny-iatlas
  An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
  ☆49Updated 4 years ago
• nicolaroberts / hdp
  R pkg for Hierarchical Dirichlet Process
  ☆79Updated 2 years ago
• teunbrand / ggnomics
  A small project to add ggplot2 extensions
  ☆81Updated 3 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• skoval / RISmed
  RISmed is an R package for downloading and analyzing data from the NCBI databases
  ☆39Updated last year
• SISBID / Reproducible-Research
  Materials for Module 3 of the SISBID Workshop, Reproducible Research
  ☆63Updated 8 years ago
• stemangiola / tidygate
  Label elements within user drawn gates
  ☆25Updated 10 months ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago
• Bioconductor / DelayedArray
  A unified framework for working transparently with on-disk and in-memory array-like datasets
  ☆27Updated 3 weeks ago
• TomKellyGenetics / leiden
  Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
  ☆40Updated last year