Alternatives and similar repositories for M3C:

Users that are interested in M3C are comparing it to the libraries listed below

• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆51Updated last week
• MSKCC-Epi-Bio / gnomeR
  Package to wrangle and visualize genomic data in R
  ☆26Updated 5 months ago
• traversc / trqwe
  Performance oriented statistical metrics and utility functions in R
  ☆29Updated 4 years ago
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆37Updated last month
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆59Updated 3 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆30Updated 3 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 9 months ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 3 weeks ago
• WandeRum / multiROC
  Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
  ☆33Updated 4 years ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 6 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆25Updated last year
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆38Updated 4 years ago
• Bioconductor / DelayedArray
  A unified framework for working transparently with on-disk and in-memory array-like datasets
  ☆27Updated last month
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆20Updated 2 months ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 weeks ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆79Updated last month
• willtownes / glmpca
  ☆94Updated 11 months ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 3 months ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆22Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated 3 months ago
• jminnier / STARTapp
  The START App: R Shiny Transcriptome Analysis Resource Tool
  ☆90Updated 4 years ago
• lianos / sparrow
  Take command of your set enrichment analyses.
  ☆21Updated 2 weeks ago
• SaskiaFreytag / schex
  ☆73Updated last year
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆90Updated 4 months ago
• SingleR-inc / SingleRBook-base
  See https://github.com/LTLA/SingleRBook for the latest version of this content.
  ☆12Updated 2 years ago