Alternatives and similar repositories for M3C

Users that are interested in M3C are comparing it to the libraries listed below

• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆38Updated 3 weeks ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆61Updated 4 years ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆80Updated 2 weeks ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• CRI-iAtlas / shiny-iatlas
  An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
  ☆49Updated 4 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆53Updated 3 months ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 3 months ago
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆38Updated 4 years ago
• neurogenomics / rworkflows
  Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
  ☆80Updated 3 months ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• MSKCC-Epi-Bio / gnomeR
  Package to wrangle and visualize genomic data in R
  ☆26Updated 9 months ago
• lucylgao / clusterpval
  ☆17Updated 2 years ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆80Updated last year
• nicolaroberts / hdp
  R pkg for Hierarchical Dirichlet Process
  ☆77Updated last year
• NikNakk / forestmodel
  ☆44Updated last year
• WandeRum / multiROC
  Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
  ☆33Updated 4 years ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 2 months ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆26Updated 2 years ago
• raysinensis / color_repel
  Repel Visually Similar Colors for Colorblind Users (CRAN)
  ☆10Updated 3 months ago
• cytoscape / cyjShiny
  An R/shiny widget for cytoscape.js
  ☆95Updated 11 months ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 8 months ago
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆17Updated last year
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated last year
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 6 years ago
• girke-lab / drugbankR
  R package for querying the DrugBank database in batch locally
  ☆37Updated 3 years ago
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆21Updated 5 years ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 4 years ago