A geometric deep learning method for refining and assessing protein complex structures.
☆16Oct 22, 2022Updated 3 years ago
Alternatives and similar repositories for DeepRefine
Users that are interested in DeepRefine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆28Mar 30, 2023Updated 3 years ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆21Dec 24, 2024Updated last year
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆258Sep 22, 2023Updated 2 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆29Jun 21, 2023Updated 3 years ago
- Convert coarse-grained protein structure to all-atom model☆58Jun 7, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Serializing molecule 3D structures☆14Nov 27, 2024Updated last year
- ☆17Feb 27, 2026Updated 4 months ago
- [ICLR24] Better Neural PDE Solvers Through Data-Free Mesh Movers☆17Mar 20, 2024Updated 2 years ago
- alphafold FAPE loss☆10Sep 28, 2021Updated 4 years ago
- An accurate and efficient protein sequence design approach☆26Mar 16, 2025Updated last year
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Apr 26, 2026Updated 2 months ago
- ☆110Apr 1, 2023Updated 3 years ago
- ☆17Jun 3, 2024Updated 2 years ago
- [BIB 2023] Official implementation of "R2-DDI: Relation-aware Feature Refinement for Drug-drug Interaction Prediction".☆13Mar 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆30Sep 10, 2024Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆132Feb 26, 2025Updated last year
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated 4 months ago
- ☆33Mar 2, 2026Updated 3 months ago
- ☆19Aug 5, 2024Updated last year
- A suite of tools to explore protein structures with Protein Blocks☆30Jan 27, 2021Updated 5 years ago
- ☆212Apr 21, 2025Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jan 22, 2026Updated 5 months ago
- ☆67Jun 14, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction☆17Feb 17, 2025Updated last year
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- DPPIN: A Biological Repository of Dynamic Protein-Protein Interaction Network Data, IEEE BigData 2022☆32Feb 13, 2023Updated 3 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Apr 13, 2026Updated 2 months ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- ☆27Dec 6, 2022Updated 3 years ago
- Protein Structure Analysis☆85Apr 29, 2026Updated 2 months ago
- A Python script to map PDB ID + chain ID to UniProt ID.☆18Mar 7, 2024Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Mar 21, 2024Updated 2 years ago
- ☆52Jan 2, 2025Updated last year
- Antibody-specific masked language model☆79Mar 5, 2026Updated 3 months ago
- ☆27Feb 16, 2022Updated 4 years ago
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated 2 years ago
- ☆11Jan 3, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year