BioinfoMachineLearning / DeepRefineLinks
A geometric deep learning method for refining and assessing protein complex structures.
☆16Updated 3 years ago
Alternatives and similar repositories for DeepRefine
Users that are interested in DeepRefine are comparing it to the libraries listed below
Sorting:
- ☆27Updated 3 weeks ago
- Structure-Informed Protein Language Model☆35Updated last year
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆39Updated 4 years ago
- dMaSIF implementation for google colab☆34Updated 2 years ago
- ☆39Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Tool for modelling the CDRs of antibodies☆32Updated 3 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆37Updated 4 months ago
- ☆28Updated 2 years ago
- Ultra-fast in-silico structure mutation☆35Updated 7 months ago
- ☆20Updated 3 years ago
- protein structure generation with sparse all-atom denoising models☆44Updated last month
- ☆23Updated 5 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆40Updated 4 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆58Updated 2 months ago
- ☆30Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆40Updated 10 months ago
- ☆21Updated last year
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Updated last year
- DLPacker☆31Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆55Updated 10 months ago
- Fragment binding prediction with ColabFold☆37Updated 7 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 7 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆60Updated this week