khughitt / labnoteLinks
A light-weight HTML lab notebook generator
☆18Updated 2 years ago
Alternatives and similar repositories for labnote
Users that are interested in labnote are comparing it to the libraries listed below
Sorting:
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- ☆28Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Subsampling of high-throughput sequencing count data☆19Updated 6 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Updated 7 years ago
- Allele frequency filter app☆14Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Class materials for the NIH HPC snakemake class☆15Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- ☆13Updated 8 years ago
- ☆25Updated 5 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- ☆11Updated 2 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 3 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 10 years ago
- Interactive table from gemini output☆10Updated 6 years ago