khughitt / labnote
A light-weight HTML lab notebook generator
☆18Updated last year
Alternatives and similar repositories for labnote:
Users that are interested in labnote are comparing it to the libraries listed below
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- ☆12Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 weeks ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 3 months ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆20Updated 2 months ago
- ☆10Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago