Alternatives and similar repositories for SNPGenie:

Users that are interested in SNPGenie are comparing it to the libraries listed below

• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆121Updated 2 months ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆115Updated 3 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated 3 weeks ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 2 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
  ☆95Updated last month
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆89Updated 7 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆171Updated this week
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆93Updated 9 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆95Updated last year
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆194Updated last year
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆119Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆178Updated 6 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆140Updated 2 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 2 months ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 4 months ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆110Updated last week
• chenlianfu / geta
  ☆73Updated 6 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆188Updated 3 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆166Updated 2 months ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆73Updated last week
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆128Updated 10 months ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆106Updated last week
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆111Updated 6 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆111Updated 7 months ago
• jtlovell / GENESPACE
  ☆196Updated 5 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆69Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆87Updated last month
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆94Updated 4 years ago