Alternatives and similar repositories for SNPGenie

Users that are interested in SNPGenie are comparing it to the libraries listed below

• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆92Updated last year
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆118Updated 4 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 3 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆110Updated 5 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆122Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆155Updated 9 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆133Updated last year
• mjsull / Easyfig
  Development version of Easyfig
  ☆102Updated last year
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated 3 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆91Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 5 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 4 months ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆114Updated 4 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆136Updated 2 months ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆88Updated 5 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 5 months ago
• SorenKarst / longread_umi
  ☆80Updated 5 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆121Updated last week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆105Updated 6 months ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆101Updated last year
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆145Updated this week
• apetkau / orthomcl-pipeline
  Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
  ☆80Updated 5 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 5 months ago