chasewnelson / SNPGenieLinks
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
☆115Updated last year
Alternatives and similar repositories for SNPGenie
Users that are interested in SNPGenie are comparing it to the libraries listed below
Sorting:
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆133Updated 3 months ago
- source code for EVM☆110Updated 6 months ago
- Metagenomic classification of long-read sequencing data☆83Updated 3 weeks ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆99Updated 3 weeks ago
- Constructing a pangenome gene graph☆188Updated this week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆96Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆182Updated 3 weeks ago
- A library for running k-mers based GWAS☆109Updated 7 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- Nanopore data assembler☆156Updated 3 years ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 2 months ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- NLR-Annotator upload☆66Updated last year
- Any Way to Show Multi genomic Synteny☆189Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆124Updated 7 months ago
- ☆79Updated 10 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆102Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Synteny Imager☆62Updated 9 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 3 months ago
- Get assembly statistics from FASTA and FASTQ files☆120Updated 2 years ago
- Best practices and workflow for genome annotation☆77Updated last month