gagneurlab / abspliceLinks
☆39Updated 7 months ago
Alternatives and similar repositories for absplice
Users that are interested in absplice are comparing it to the libraries listed below
Sorting:
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- simplified cellranger for long-read data☆19Updated 5 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 2 weeks ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- IDR☆30Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- ☆34Updated 2 months ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 2 weeks ago
- ☆38Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- VEP Plugin to annotate high-impact five prime UTR variants☆28Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated 3 months ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Gene Fusion Visualiser☆51Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆20Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago