gagneurlab / absplice
☆38Updated 7 months ago
Alternatives and similar repositories for absplice:
Users that are interested in absplice are comparing it to the libraries listed below
- simplified cellranger for long-read data☆18Updated last week
- IDR☆31Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆35Updated 2 weeks ago
- ☆33Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 9 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆50Updated last month
- ☆38Updated 5 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆29Updated last year
- ☆15Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated this week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated 3 weeks ago
- ☆27Updated 8 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 weeks ago
- BAGEL software☆27Updated last year