ncbi / BAMscale
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
☆67Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for BAMscale
- BigWig and BAM utilities☆92Updated 7 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆52Updated 3 weeks ago
- Long read to rMATS☆31Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 8 months ago
- IDR☆30Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- Tip and tricks for BAM files☆84Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆75Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Tutorial Website☆53Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated last month
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆37Updated last month
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆51Updated 5 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Evolutionary Transcriptomics with R☆41Updated last week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago