From RNA-seq raw reads to enriched pathways by DEGs
☆33Apr 26, 2024Updated 2 years ago
Alternatives and similar repositories for Enrichment-Analysis
Users that are interested in Enrichment-Analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scRNA analysis of public dataset on bladder cancer☆20Dec 12, 2025Updated 7 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆35Feb 18, 2026Updated 5 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆35Oct 27, 2018Updated 7 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆33May 2, 2024Updated 2 years ago
- Survival analysis on gene expression (RNA-seq) in bladder cancer TCGA data☆25Apr 26, 2024Updated 2 years ago
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆15May 5, 2026Updated 2 months ago
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- All data and notebook for my 2020 scRNA-seq analysis workshop☆18Jul 27, 2020Updated 6 years ago
- ☆12May 17, 2026Updated 2 months ago
- Coursera Advanced R Programming☆12Jan 18, 2023Updated 3 years ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 3 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆18Feb 18, 2021Updated 5 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 8 months ago
- Explore the Hi-Cs☆12Updated this week
- Computes FRC from SAM/BAM file and not from afg files☆17Oct 5, 2018Updated 7 years ago
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆29Feb 19, 2020Updated 6 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Visualise correlation results and test significancies of these☆25Feb 7, 2020Updated 6 years ago
- ☆13Dec 23, 2013Updated 12 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Fungal Validation and Identification Pipeline☆14Jul 13, 2026Updated 2 weeks ago
- ☆11Mar 10, 2024Updated 2 years ago
- BSMN common data processing pipeline☆11Jun 6, 2025Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Apr 12, 2021Updated 5 years ago