Alternatives and similar repositories for bsmn-pipeline:

Users that are interested in bsmn-pipeline are comparing it to the libraries listed below

• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆45Updated 2 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆38Updated 3 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• GeneDx / scramble
  ☆39Updated 11 months ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated last month
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 5 months ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆25Updated last month
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• nloyfer / UXM_deconv
  ☆41Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last week
• Shians / NanoMethViz
  ☆26Updated 3 weeks ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 3 months ago
• girirajanlab / CN_Learn
  CN-Learn
  ☆29Updated 5 years ago
• bcgsc / HLAminer
  ⛏ HLA predictions from NGS shotgun data
  ☆52Updated this week
• dixonlab / hic_breakfinder
  ☆36Updated 5 years ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆50Updated 4 years ago
• LappalainenLab / lorals
  ☆33Updated last year
• smithlabcode / dnmtools
  Tools for analyzing DNA methylation data
  ☆39Updated last month
• MeHelmy / princess
  ☆79Updated 3 weeks ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆30Updated last year
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• bergmanlab / drosophila-transposons
  Drosophila transposable element canonical sequences
  ☆28Updated 2 years ago