bsmn / bsmn-pipeline
BSMN common data processing pipeline
☆12Updated 2 years ago
Alternatives and similar repositories for bsmn-pipeline:
Users that are interested in bsmn-pipeline are comparing it to the libraries listed below
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Find and characterise transposable element insertions☆21Updated last year
- ☆39Updated 10 months ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- ☆21Updated 11 months ago
- ☆39Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated this week
- ☆36Updated 5 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆33Updated last year
- ☆20Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 4 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- ☆40Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 10 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Tools for analyzing DNA methylation data☆36Updated last week
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ☆12Updated 11 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 7 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago