Alternatives and similar repositories for Calculating-FUSION-TWAS-weights-pipeline:

Users that are interested in Calculating-FUSION-TWAS-weights-pipeline are comparing it to the libraries listed below

• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆31Updated 7 months ago
• cuelee / pleio
  ☆19Updated last year
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated last month
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated last year
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 4 months ago
• opain / Inferred-functional-risk-scoring
  R script for generating functionally informed genetic risk scores from TWAS
  ☆11Updated last year
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• YuyingLi-X / HDL-L
  The local version of high-definition likelihood inference of genetic correlations (HDL-L)
  ☆11Updated 2 months ago
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆13Updated 3 weeks ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆16Updated 5 months ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆31Updated 2 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆15Updated 3 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆23Updated this week
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 6 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆33Updated 3 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆22Updated 6 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 11 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated 6 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 8 months ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 7 months ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆29Updated 2 weeks ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆15Updated 4 months ago
• precimed / gsa-mixer
  ☆14Updated last month