gabraham / plink2RLinks
Read PLINK BED/BIM/FAM files into R
☆41Updated 4 years ago
Alternatives and similar repositories for plink2R
Users that are interested in plink2R are comparing it to the libraries listed below
Sorting:
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- ☆63Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated 2 years ago
- Main ricopili repo for public releases☆49Updated 6 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- ☆50Updated this week
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 7 years ago
- Make LocusZoom-like plots with your own LD matrix.☆45Updated 3 years ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- ☆24Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆34Updated 3 months ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- QTL Discovery using Annotations☆26Updated 2 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆91Updated 4 months ago
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 8 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- ☆40Updated 7 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆53Updated last week
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago