Read PLINK BED/BIM/FAM files into R
☆44Jul 26, 2021Updated 5 years ago
Alternatives and similar repositories for plink2R
Users that are interested in plink2R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A matrix-like wrapper around PLINK .bed files☆19Sep 6, 2024Updated last year
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 11 months ago
- methods for functional summary-based imputation☆109Mar 17, 2026Updated 5 months ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PLINK reader for Python.☆90May 12, 2025Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Random stuff for BLUPF90 programs☆17Aug 28, 2023Updated 3 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 6 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆25Apr 25, 2023Updated 3 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆54Feb 1, 2019Updated 7 years ago
- a set of NGS pipelines☆25Updated this week
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Jun 16, 2023Updated 3 years ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆45Oct 23, 2025Updated 10 months ago
- LD Score Regression (LDSC)☆799Jan 16, 2026Updated 7 months ago
- Notes on SNP-related tools and genome variation analysis☆29Aug 11, 2026Updated 3 weeks ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- Pipelines for NGS, imputation, gwas, ...☆30Dec 18, 2019Updated 6 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆36Jun 17, 2025Updated last year
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆22Apr 26, 2024Updated 2 years ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Query the gene models of a given organism/assembly☆26Aug 27, 2026Updated last week
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆45Sep 18, 2025Updated 11 months ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 5 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Leveraging functional information to improve GWAS summary statistic imputation☆21Aug 10, 2021Updated 5 years ago
- Fine-mapping pipeline for Open Targets Genetics☆29May 11, 2026Updated 3 months ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆20Apr 23, 2025Updated last year
- Handy genetics-related R scripts☆32Nov 22, 2019Updated 6 years ago
- Generalized linear Mixed Model Association Tests☆49Nov 21, 2025Updated 9 months ago
- Create regional association plots from GWAS or meta-analysis☆64Jan 21, 2020Updated 6 years ago
- A collection of commonly used resources for complex trait genetics.☆45Jul 9, 2026Updated last month