gabraham / plink2R
Read PLINK BED/BIM/FAM files into R
☆39Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for plink2R
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆49Updated 5 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Sequence kernel association test (SKAT)☆42Updated last year
- Main ricopili repo for public releases☆42Updated this week
- ☆42Updated 3 weeks ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated 3 weeks ago
- ☆33Updated 3 years ago
- ☆40Updated 6 years ago
- ☆19Updated last year
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 10 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆62Updated last year
- Easily download publicly available GWAS summary statistics.☆73Updated 11 months ago
- Colocalization analysis of genetic association signals☆49Updated last week
- Create regional association plots from GWAS or meta-analysis☆59Updated 4 years ago
- software package for integrative genetic association analysis☆33Updated last year
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆41Updated 2 weeks ago
- methods for functional summary-based imputation☆76Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 6 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- ☆32Updated last year
- An R package to time somatic mutations☆60Updated 3 years ago
- Manhattan++☆27Updated 9 months ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated 9 months ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago