Alternatives and similar repositories for plink2R

Users that are interested in plink2R are comparing it to the libraries listed below

• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆53Updated 6 years ago
• fhormoz / caviar
  ☆63Updated 4 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆51Updated 9 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 10 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated last month
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆54Updated 5 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆69Updated 7 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆63Updated last month
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆44Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆71Updated 2 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆35Updated 7 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆90Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆48Updated 3 years ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆92Updated 7 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated last week
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated 2 years ago
• hakyimlab / PredictDBPipeline
  ☆16Updated 5 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆30Updated 7 years ago
• zhouhufeng / FAVORannotator
  ☆22Updated 2 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆33Updated 7 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 7 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated last month