phenoscanner / phenoscannerLinks
phenoscanner allows users to query the PhenoScanner database of genotype-phenotype associations from inside R
☆49Updated 2 years ago
Alternatives and similar repositories for phenoscanner
Users that are interested in phenoscanner are comparing it to the libraries listed below
Sorting:
- Reading, querying and writing GWAS summary data in VCF format☆80Updated last year
- An R package for Mendelian Randomization☆37Updated last year
- ☆27Updated 3 years ago
- LDlinkR☆59Updated last year
- Data objects for various sets of instruments☆44Updated 4 years ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆51Updated 4 years ago
- Regional association plots☆26Updated last year
- this repository contains the code (not the data and the results) to reproduce the paper : Impact of the gut microbiota and associated met…☆15Updated 3 years ago
- Pair-wise conditional analysis and colocalisation☆41Updated last year
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Updated last year
- R package for CAUSE☆55Updated last year
- Meta-analysis of genomewide association scans☆56Updated 10 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.☆38Updated 3 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆26Updated 7 months ago
- ☆14Updated 7 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆34Updated 4 months ago
- Power calculations for Mendelian Randomisation☆22Updated 7 years ago
- A collection of various utilities for GWAS summary statistics☆27Updated last year
- ☆22Updated 3 years ago
- ☆16Updated 3 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆29Updated last year
- An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of su…☆33Updated 2 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆53Updated last year
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆36Updated 3 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 7 months ago