A repository for setting up a RNAseq workflow
☆456Apr 10, 2017Updated 9 years ago
Alternatives and similar repositories for RNAseq-workflow
Users that are interested in RNAseq-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAseq analysis notes from Ming Tang☆1,076Nov 15, 2021Updated 4 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,420May 31, 2023Updated 2 years ago
- DEG analysis and KEGG/GO enrichment analysis☆69Dec 23, 2017Updated 8 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,243Updated this week
- ☆192Aug 16, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year
- ☆445Jun 15, 2020Updated 5 years ago
- A universal enrichment tool for interpreting omics data☆1,196Updated this week
- 二代测序数据分析☆379Dec 6, 2023Updated 2 years ago
- A comprehensive tutorial about GWAS and PRS☆975Apr 1, 2023Updated 3 years ago
- Unix, R and python tools for genomics and data science☆1,375Aug 25, 2025Updated 7 months ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 10 years ago
- a small collection for my R scripts☆166Mar 1, 2019Updated 7 years ago
- A curated list of resources for learning bioinformatics.☆509Feb 23, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,695Apr 6, 2026Updated last week
- RNASeq pipeline☆36Oct 28, 2019Updated 6 years ago
- ☆869Oct 18, 2022Updated 3 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Updated this week
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆332Dec 21, 2018Updated 7 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated last month
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,560Dec 11, 2022Updated 3 years ago
- A curated list of awesome Bioinformatics libraries and software.☆3,933Updated this week
- ☆255Oct 28, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools to process and analyze deep sequencing data.☆754Jul 23, 2025Updated 8 months ago
- ☆14Mar 13, 2018Updated 8 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆365Jun 6, 2025Updated 10 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- RNA-seq aligner☆2,178Mar 18, 2025Updated last year
- Transcriptomics Visualization R package.☆76Apr 16, 2025Updated 11 months ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- ☆137Aug 30, 2019Updated 6 years ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆113Feb 6, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 10 months ago
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆293Mar 22, 2026Updated 3 weeks ago
- scRNAseq analysis notes from Ming Tang☆797Dec 2, 2024Updated last year
- ☆23Aug 22, 2019Updated 6 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆887Feb 7, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆401May 10, 2024Updated last year