Alternatives and similar repositories for RNAseq-workflow

Users that are interested in RNAseq-workflow are comparing it to the libraries listed below

• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆326Updated 6 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆805Updated 10 months ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 5 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆307Updated 2 years ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆394Updated 2 weeks ago
• hbctraining / scRNA-seq
  ☆567Updated 4 years ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,014Updated 3 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆422Updated 11 months ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆369Updated last year
• jmzeng1314 / 5years
  ☆241Updated 5 years ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆468Updated last month
• hbctraining / Intro-to-DGE
  ☆199Updated 3 months ago
• hbctraining / Intro-to-scRNAseq
  ☆601Updated 2 months ago
• jmzeng1314 / scRNA_smart_seq2
  ☆310Updated 5 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆182Updated 7 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆620Updated 4 months ago
• jmzeng1314 / my_WGCNA
  ☆277Updated 5 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆745Updated 2 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆485Updated 4 years ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆509Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆341Updated 10 months ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆676Updated 3 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆424Updated 2 months ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆510Updated 3 months ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆334Updated 3 weeks ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆297Updated 2 years ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆305Updated this week
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆466Updated last month