Alternatives and similar repositories for RNAseq-workflow

Users that are interested in RNAseq-workflow are comparing it to the libraries listed below

• hbctraining / DGE_workshop
  ☆408Updated 4 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆444Updated 5 years ago
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆330Updated 7 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆839Updated last year
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆370Updated this week
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆320Updated 3 years ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆377Updated 2 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆446Updated last year
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆445Updated 2 months ago
• jmzeng1314 / my_WGCNA
  ☆295Updated 6 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆768Updated last week
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆491Updated 8 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,068Updated 4 years ago
• jmzeng1314 / 5years
  ☆253Updated 6 years ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆630Updated last week
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆501Updated 5 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆187Updated 8 years ago
• hbctraining / Intro-to-scRNAseq
  ☆646Updated 3 weeks ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆539Updated 2 weeks ago
• hbctraining / scRNA-seq
  ☆602Updated 4 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆351Updated last month
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆394Updated 4 months ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆430Updated last year
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆278Updated last year
• hbctraining / Intro-to-DGE
  ☆211Updated 5 months ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆678Updated 3 years ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆460Updated last year
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆485Updated 2 weeks ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆442Updated 6 months ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆520Updated last month