A repository for setting up a RNAseq workflow
☆459Apr 10, 2017Updated 9 years ago
Alternatives and similar repositories for RNAseq-workflow
Users that are interested in RNAseq-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,437May 31, 2023Updated 3 years ago
- RNAseq analysis notes from Ming Tang☆1,097Nov 15, 2021Updated 4 years ago
- DEG analysis and KEGG/GO enrichment analysis☆70Dec 23, 2017Updated 8 years ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,403Updated this week
- ☆192Aug 16, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- 二代测序数据分析☆379Dec 6, 2023Updated 2 years ago
- A curated list of resources for learning bioinformatics.☆528Aug 29, 2026Updated 2 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,889Updated this week
- Unix, R and python tools for genomics and data science☆1,407Aug 25, 2025Updated last year
- ☆11Nov 21, 2017Updated 8 years ago
- ☆445Jun 15, 2020Updated 6 years ago
- A comprehensive tutorial about GWAS and PRS☆1,027Apr 1, 2023Updated 3 years ago
- RNASeq pipeline☆36Oct 28, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dix-seq: An integrated pipeline for fast amplicon data analysis☆11Dec 9, 2024Updated last year
- A universal enrichment tool for interpreting omics data☆1,245Updated this week
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆334Dec 21, 2018Updated 7 years ago
- ☆893Oct 18, 2022Updated 4 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,599Dec 11, 2022Updated 3 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,454Oct 7, 2026Updated 3 weeks ago
- a small collection for my R scripts☆166Mar 1, 2019Updated 7 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆942Updated this week
- A curated list of awesome Bioinformatics libraries and software.☆4,352Sep 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Mar 13, 2018Updated 8 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆378Jul 6, 2026Updated 3 months ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Oct 22, 2022Updated 4 years ago
- scRNAseq analysis notes from Ming Tang☆845Dec 2, 2024Updated last year
- A nextflow pipeline for performing bacterial RNA-Seq data analysis☆14Oct 15, 2026Updated 2 weeks ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆105Jul 1, 2022Updated 4 years ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆136Aug 30, 2019Updated 7 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆161Dec 11, 2025Updated 10 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆902Apr 23, 2026Updated 6 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆117May 5, 2026Updated 5 months ago
- handbook of biostatistic and R☆75Jan 9, 2018Updated 8 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 9 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆506Feb 25, 2026Updated 8 months ago