Alternatives and similar repositories for oneliners

Users that are interested in oneliners are comparing it to the libraries listed below

• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,413Updated 2 years ago
• applied-bioinformatics / An-Introduction-To-Applied-Bioinformatics
  Interactive lessons in bioinformatics.
  ☆871Updated 4 years ago
• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,360Updated 5 months ago
• BioContainers / containers
  Bioinformatics containers
  ☆772Updated 3 months ago
• vsbuffalo / bds-files
  Supplementary files for my book, "Bioinformatics Data Skills"
  ☆707Updated 7 years ago
• harvardinformatics / learning-bioinformatics-at-home
  resources for learning bioinformatics
  ☆1,340Updated last year
• quinlan-lab / applied-computational-genomics
  Applied Computational Genomics Course at UU: Spring 2020
  ☆1,073Updated last year
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,068Updated 4 years ago
• sib-swiss / training-collection
  Collection of bioinformatics training materials
  ☆1,092Updated 2 weeks ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆622Updated 9 months ago
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,045Updated last week
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆555Updated 6 months ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,190Updated this week
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆839Updated last year
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆262Updated 5 years ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,524Updated 8 months ago
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆881Updated 11 months ago
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,417Updated 2 weeks ago
• OpenGene / fastp
  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
  ☆2,269Updated last week
• shenwei356 / seqkit
  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  ☆1,505Updated last week
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,059Updated 6 months ago
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆504Updated 3 years ago
• lh3 / bioawk
  BWK awk modified for biological data
  ☆636Updated 3 years ago
• freebayes / freebayes
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.
  ☆862Updated 8 months ago
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,026Updated last year
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆890Updated last week
• samtools / samtools
  Tools (written in C using htslib) for manipulating next-generation sequencing data
  ☆1,829Updated this week
• jtleek / genomicspapers
  The Leek group guide to genomics papers
  ☆499Updated 7 years ago
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆620Updated 7 months ago