Alternatives and similar repositories for oneliners

Users that are interested in oneliners are comparing it to the libraries listed below

• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,288Updated 3 months ago
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,379Updated 2 years ago
• applied-bioinformatics / An-Introduction-To-Applied-Bioinformatics
  Interactive lessons in bioinformatics.
  ☆845Updated 3 years ago
• vsbuffalo / bds-files
  Supplementary files for my book, "Bioinformatics Data Skills"
  ☆668Updated 6 years ago
• harvardinformatics / learning-bioinformatics-at-home
  resources for learning bioinformatics
  ☆1,049Updated 6 months ago
• quinlan-lab / applied-computational-genomics
  Applied Computational Genomics Course at UU: Spring 2020
  ☆981Updated last year
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,016Updated 3 years ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆606Updated 2 months ago
• sib-swiss / training-collection
  Collection of bioinformatics training materials
  ☆1,034Updated this week
• BioContainers / containers
  Bioinformatics containers
  ☆731Updated 2 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆487Updated 4 years ago
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,327Updated last week
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,476Updated last month
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆978Updated last week
• shenwei356 / seqkit
  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  ☆1,436Updated 2 months ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆809Updated 11 months ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆532Updated 5 months ago
• lh3 / bioawk
  BWK awk modified for biological data
  ☆624Updated 2 years ago
• danielecook / Awesome-Bioinformatics
  A curated list of awesome Bioinformatics libraries and software.
  ☆3,529Updated 3 months ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,060Updated last week
• OpenGene / fastp
  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
  ☆2,121Updated last week
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,008Updated 10 months ago
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆862Updated 5 months ago
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆255Updated 4 years ago
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆480Updated 3 years ago
• Mo7ammedFarahat / BioinformaticsWorkshop-Jan25
  Introduction to Bioinformatics Traning @Medical Ain Shams Research Institute (MASRI) Jan-2025
  ☆11Updated 5 months ago
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,021Updated 11 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆985Updated 4 months ago
• jtleek / genomicspapers
  The Leek group guide to genomics papers
  ☆489Updated 6 years ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆816Updated 2 months ago