Useful bash one-liners for bioinformatics.
☆2,024Sep 9, 2023Updated 2 years ago
Alternatives and similar repositories for oneliners
Users that are interested in oneliners are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A curated list of awesome Bioinformatics libraries and software.☆4,229Apr 7, 2026Updated 4 months ago
- Bioinformatics one liners from Ming Tang☆502Oct 4, 2020Updated 5 years ago
- Interactive lessons in bioinformatics.☆902Jul 19, 2021Updated 5 years ago
- Bioinformatics code libraries and scripts☆572Jul 10, 2026Updated last month
- Unix, R and python tools for genomics and data science☆1,404Aug 25, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,486Updated this week
- A list of useful bioinformatics resources☆637May 4, 2026Updated 3 months ago
- BWK awk modified for biological data☆643Aug 11, 2022Updated 4 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,437May 31, 2023Updated 3 years ago
- Path to a free self-taught education in Bioinformatics!☆7,078Apr 8, 2024Updated 2 years ago
- Bioinformatics containers☆807Jul 7, 2026Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,409Jul 30, 2026Updated 2 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,588Jul 8, 2026Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,553Jun 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Applied Computational Genomics Course at UU: Spring 2020☆1,131Apr 5, 2024Updated 2 years ago
- A list of interesting genome browser and genome visualization programs☆1,100Jul 21, 2026Updated 3 weeks ago
- Collection of bioinformatics training materials☆1,141Aug 2, 2026Updated last week
- resources for learning bioinformatics☆1,616Jan 8, 2025Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,829Aug 1, 2026Updated last week
- RNAseq analysis notes from Ming Tang☆1,096Nov 15, 2021Updated 4 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆869May 2, 2026Updated 3 months ago
- Gene cluster comparison figure generator☆653Dec 22, 2025Updated 7 months ago
- Incubator for useful bioinformatics code, primarily in Python and R☆645Feb 5, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆371Jul 6, 2026Updated last month
- Java utilities for Bioinformatics☆524Jul 24, 2026Updated 2 weeks ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆554Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,045Jun 10, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,231May 19, 2026Updated 2 months ago
- Bioinformatics Workbook repository☆210Jul 30, 2026Updated 2 weeks ago
- A grammar of graphics for comparative genomics☆776Jul 3, 2026Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆407Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python library to facilitate genome assembly, annotation, and comparative genomics☆925Updated this week
- Python for Bioinformatics☆264Oct 1, 2020Updated 5 years ago
- A tool to find sequencing data and metadata from public databases.☆604Aug 13, 2024Updated 2 years ago
- A curated list of resources for learning bioinformatics.☆519Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆352Jul 27, 2026Updated 2 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,082Apr 7, 2026Updated 4 months ago
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated 2 years ago