Useful bash one-liners for bioinformatics.
☆1,998Sep 9, 2023Updated 2 years ago
Alternatives and similar repositories for oneliners
Users that are interested in oneliners are comparing it to the libraries listed below
Sorting:
- A curated list of awesome Bioinformatics libraries and software.☆3,870Mar 21, 2025Updated 11 months ago
- Bioinformatics one liners from Ming Tang☆501Oct 4, 2020Updated 5 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,425Updated this week
- Bioinformatics code libraries and scripts☆559Jul 22, 2025Updated 7 months ago
- Interactive lessons in bioinformatics.☆876Jul 19, 2021Updated 4 years ago
- Unix, R and python tools for genomics and data science☆1,371Aug 25, 2025Updated 6 months ago
- A list of useful bioinformatics resources☆625Apr 29, 2025Updated 10 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,292Jan 22, 2026Updated last month
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,416May 31, 2023Updated 2 years ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Updated this week
- Applied Computational Genomics Course at UU: Spring 2020☆1,075Apr 5, 2024Updated last year
- A list of interesting genome browser and genome visualization programs☆1,051Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,528Jun 1, 2025Updated 9 months ago
- resources for learning bioinformatics☆1,360Jan 8, 2025Updated last year
- BWK awk modified for biological data☆637Aug 11, 2022Updated 3 years ago
- Bioinformatics containers☆777Feb 4, 2026Updated 3 weeks ago
- RNAseq analysis notes from Ming Tang☆1,069Nov 15, 2021Updated 4 years ago
- Collection of bioinformatics training materials☆1,098Feb 22, 2026Updated last week
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,659Feb 15, 2026Updated 2 weeks ago
- Gene cluster comparison figure generator☆636Dec 22, 2025Updated 2 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆826Feb 10, 2026Updated 2 weeks ago
- Path to a free self-taught education in Bioinformatics!☆6,711Apr 8, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,128Feb 13, 2026Updated 2 weeks ago
- A grammar of graphics for comparative genomics☆744Feb 23, 2026Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆358Jun 6, 2025Updated 8 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆539Feb 23, 2026Updated last week
- Java utilities for Bioinformatics☆518Feb 6, 2026Updated 3 weeks ago
- bedtools - the swiss army knife for genome arithmetic☆1,025Mar 11, 2025Updated 11 months ago
- A tool to find sequencing data and metadata from public databases.☆595Aug 13, 2024Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆342Apr 7, 2025Updated 10 months ago
- Incubator for useful bioinformatics code, primarily in Python and R☆645Feb 5, 2025Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆399Jan 23, 2026Updated last month
- Python library to facilitate genome assembly, annotation, and comparative genomics☆890Feb 15, 2026Updated 2 weeks ago
- A curated list of resources for learning bioinformatics.☆505Feb 23, 2022Updated 4 years ago
- ChIP-seq analysis notes from Ming Tang☆842Aug 5, 2024Updated last year
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,026Aug 24, 2024Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,060Jul 28, 2025Updated 7 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 6 months ago