griffithlab / rnaseq_tutorial_wiki
The wiki repo, with pull request enabled, for the rnaseq_tutorial
☆25Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for rnaseq_tutorial_wiki
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- ☆29Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Galaxy RNA workbench☆38Updated 4 years ago
- ☆47Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆38Updated last year
- ☆78Updated 10 years ago
- Tip and tricks for BAM files☆82Updated 6 years ago
- Materials for Spring 2018 Applied Genomics Course☆77Updated 5 years ago
- Issue tracker for the Biostar Handbook☆57Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Unsorted scripts for bioinformatics☆59Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆26Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 8 years ago
- A list of alternative splicing analysis resources☆37Updated 3 weeks ago