Alternatives and similar repositories for biotools

Users that are interested in biotools are comparing it to the libraries listed below

• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆542Updated last month
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆493Updated 4 years ago
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆489Updated 3 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆838Updated last year
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,005Updated last week
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆733Updated last month
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,036Updated 3 years ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,101Updated this week
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,353Updated last week
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆260Updated 4 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆818Updated last year
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆794Updated 2 months ago
• hbctraining / DGE_workshop
  ☆395Updated 3 years ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆851Updated 3 weeks ago
• chapmanb / bcbb
  Incubator for useful bioinformatics code, primarily in Python and R
  ☆630Updated 7 months ago
• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,316Updated 3 weeks ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆441Updated 5 years ago
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,030Updated last month
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆754Updated last month
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆606Updated 2 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆649Updated 2 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆999Updated 6 months ago
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆698Updated 5 months ago
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,491Updated 3 months ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆829Updated 4 months ago
• quinlan-lab / applied-computational-genomics
  Applied Computational Genomics Course at UU: Spring 2020
  ☆1,046Updated last year
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆530Updated last month
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆192Updated last week
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆869Updated 7 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆442Updated 8 years ago