Genome data visualizations
☆224Jan 10, 2026Updated 4 months ago
Alternatives and similar repositories for GenVisR
Users that are interested in GenVisR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆492Feb 25, 2026Updated 2 months ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 3 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- Count bases in BAM/CRAM files☆324Jan 31, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 3 months ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆367Jun 6, 2025Updated 11 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆418Mar 13, 2026Updated 2 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆138Aug 21, 2024Updated last year
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomic data interpretation and visualization Workshop☆22May 8, 2026Updated last week
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- An R package for inferring the subclonal architecture of tumors☆124Mar 15, 2026Updated 2 months ago
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 5 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆402May 1, 2026Updated 2 weeks ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated 11 months ago
- ☆69Jun 21, 2022Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Genome Modeling System installer☆78Jul 10, 2015Updated 10 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆249Oct 18, 2024Updated last year
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 3 weeks ago
- Identifying recurrent mutations in cancer☆39Mar 4, 2021Updated 5 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆160Feb 12, 2026Updated 3 months ago
- Personal Cancer Genome Reporter (PCGR)☆277Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 5 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,422May 31, 2023Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 3 years ago
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆104Jan 12, 2026Updated 4 months ago
- Make Complex Heatmaps☆1,492Apr 2, 2026Updated last month
- Software program for checking sample matching for NGS data☆141Jun 20, 2024Updated last year