griffithlab / GenVisRLinks
Genome data visualizations
☆217Updated last year
Alternatives and similar repositories for GenVisR
Users that are interested in GenVisR are comparing it to the libraries listed below
Sorting:
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆190Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆314Updated last week
- Statistical Analysis of RNA-Seq Tools☆107Updated 2 months ago
- Tools to work with variant call format files☆259Updated 3 months ago
- Bioconductor cheat sheet☆189Updated 9 months ago
- Differential analysis of RNA-Seq☆304Updated last week
- ☆174Updated 4 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆168Updated last year
- An R package for creating Q-Q and manhattan plots from GWAS results☆168Updated last year
- Transcript quantification import for modular pipelines☆138Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆216Updated last year
- Genomic Data Retrieval with R☆222Updated 4 months ago
- an R/shiny application for creation of Circos plot interactively☆157Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆259Updated 4 months ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last month
- Materials for Analyzing Next-Generation Sequencing (ANGUS) course.☆107Updated 2 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆110Updated 6 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆147Updated 3 years ago
- BEDOPS: high-performance genomic feature operations☆337Updated last month
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 3 weeks ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆119Updated last year
- Analysis pipeline for cancer sequencing data☆110Updated last month
- Publication-quality sequence logos in R☆213Updated 7 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 5 months ago
- R data package for annotating/converting Gene IDs☆163Updated 2 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated 11 months ago
- Rare variant test software for next generation sequencing data☆139Updated 3 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago