griffithlab / GenVisR

Related projects: ⓘ

• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆296Updated 8 months ago
• knausb / vcfR
  Tools to work with variant call format files
  ☆243Updated this week
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆186Updated 6 months ago
• ropensci / biomartr
  Genomic Data Retrieval with R
  ☆212Updated 2 months ago
• UMCUGenetics / MutationalPatterns
  R package for extracting and visualizing mutational patterns in base substitution catalogues
  ☆104Updated last year
• mikelove / bioc-refcard
  Bioconductor cheat sheet
  ☆186Updated 3 weeks ago
• PF2-pasteur-fr / SARTools
  Statistical Analysis of RNA-Seq Tools
  ☆103Updated last year
• alyssafrazee / ballgown
  Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
  ☆141Updated 3 years ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆204Updated last month
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆154Updated 6 months ago
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆162Updated last year
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆305Updated 2 months ago
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆202Updated 7 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆220Updated last month
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆158Updated last month
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆151Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆160Updated last year
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆209Updated 11 months ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆171Updated 3 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆202Updated 3 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆131Updated 2 years ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆134Updated last year
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆134Updated 5 months ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆295Updated 7 months ago
• mfumagalli / ngsTools
  Programs to analyse NGS data for population genetics purposes
  ☆161Updated 3 weeks ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆115Updated 11 months ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆137Updated last year
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated last year
• ngs-docs / angus
  Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
  ☆105Updated last year
• TickingClock1992 / RIdeogram
  ☆157Updated 3 years ago