Genome data visualizations
☆222Jan 10, 2026Updated 2 months ago
Alternatives and similar repositories for GenVisR
Users that are interested in GenVisR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆486Feb 25, 2026Updated last month
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated 2 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- Count bases in BAM/CRAM files☆323Jan 31, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆365Jun 6, 2025Updated 10 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,028Aug 24, 2024Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆416Mar 13, 2026Updated 3 weeks ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Aug 21, 2024Updated last year
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 3 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genomic data interpretation and visualization Workshop☆22Mar 24, 2026Updated 2 weeks ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- An R package for inferring the subclonal architecture of tumors☆122Mar 15, 2026Updated 3 weeks ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- ☆69Jun 21, 2022Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- The Genome Modeling System installer☆78Jul 10, 2015Updated 10 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 11 months ago
- Identifying recurrent mutations in cancer☆39Mar 4, 2021Updated 5 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated last month
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,420May 31, 2023Updated 2 years ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Apr 16, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Apr 1, 2026Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆270May 5, 2023Updated 2 years ago
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆104Jan 12, 2026Updated 2 months ago
- Software program for checking sample matching for NGS data☆138Jun 20, 2024Updated last year
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 5 years ago