FOI-Bioinformatics / flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
☆66Updated this week
Alternatives and similar repositories for flextaxd:
Users that are interested in flextaxd are comparing it to the libraries listed below
- ☆79Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago
- IS mapping software☆53Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Reorients assembled microbial sequences☆106Updated this week
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆87Updated this week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆14Updated 9 months ago
- whole genome MLST analysis☆40Updated 8 months ago
- A toolkit for prokaryotic comparative genomics☆38Updated 2 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆71Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆59Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Precise host read removal☆84Updated 3 weeks ago
- ☆57Updated 3 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago