FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
☆68Jun 4, 2026Updated 2 months ago
Alternatives and similar repositories for flextaxd
Users that are interested in flextaxd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 9 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 9 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆219Apr 24, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆62Apr 18, 2026Updated 3 months ago
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- ☆85Sep 13, 2023Updated 2 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jul 20, 2026Updated 3 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Aug 3, 2026Updated last week
- Create a tree using Mash distances☆189Oct 24, 2023Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 3 weeks ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 9 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆84Jul 24, 2026Updated 2 weeks ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 8 months ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Metagenomic Binning Algorithm☆55Jan 16, 2026Updated 6 months ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 3 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆182Jul 22, 2026Updated 3 weeks ago