FOI-Bioinformatics / flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
☆65Updated last month
Alternatives and similar repositories for flextaxd:
Users that are interested in flextaxd are comparing it to the libraries listed below
- ☆81Updated last year
- IS mapping software☆53Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Reorients assembled microbial sequences☆116Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- ☆52Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated last year
- whole genome MLST analysis☆41Updated last month
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆61Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Precise host read removal☆94Updated last week
- Split Kmer Analysis☆63Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆47Updated 3 months ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Updated 5 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆101Updated 3 weeks ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated this week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago