FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
☆67Mar 15, 2026Updated last week
Alternatives and similar repositories for flextaxd
Users that are interested in flextaxd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 4 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 8 months ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 5 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆175Feb 26, 2026Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Apr 29, 2025Updated 10 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Updated this week
- ☆84Sep 13, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Create a tree using Mash distances☆184Oct 24, 2023Updated 2 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 6 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆19Feb 27, 2026Updated 3 weeks ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆172Mar 13, 2026Updated last week
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 6 months ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 3 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 4 months ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Feb 26, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆170Jan 2, 2026Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- 🌈 Interactive analysis of metagenomics data☆445Sep 17, 2025Updated 6 months ago