An R package for ECM molecule annotation, classification, and analysis
☆14Sep 20, 2024Updated last year
Alternatives and similar repositories for MatrisomeAnalyzeR
Users that are interested in MatrisomeAnalyzeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 20, 2021Updated 5 years ago
- ☆12Jan 14, 2023Updated 3 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- Multi-omics multi-layered network integration and interpretation☆14Oct 15, 2024Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆45May 9, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI…☆19Jul 3, 2024Updated last year
- ☆25Feb 6, 2025Updated last year
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 7 months ago
- ☆23Mar 28, 2024Updated 2 years ago
- Example CellProfiler pipelines.☆19Jul 19, 2022Updated 3 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆28Oct 2, 2025Updated 8 months ago
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 3 years ago
- In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.☆28Sep 20, 2023Updated 2 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆12Mar 11, 2024Updated 2 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆15Jan 26, 2026Updated 4 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆45Apr 18, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SpellbookMerge is a mod for Pathfinder Wrath of the righteous that allows additional spellbook merging options☆21Mar 8, 2023Updated 3 years ago
- A red hot theme for GitHub pages.☆70Oct 22, 2017Updated 8 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Jun 1, 2026Updated last week
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆12Mar 3, 2023Updated 3 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 10 months ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆25Nov 26, 2023Updated 2 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Jan 2, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- ☆11Jan 15, 2020Updated 6 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆16Apr 15, 2025Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆14Dec 21, 2022Updated 3 years ago