Alternatives and similar repositories for MatrisomeAnalyzeR

Users that are interested in MatrisomeAnalyzeR are comparing it to the libraries listed below

• YosefLab / popV
  ☆85Updated 2 weeks ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆126Updated 8 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆117Updated 2 months ago
• data2intelligence / CytoSig
  ☆60Updated this week
• NBISweden / single-cell_sib_scilifelab_2021
  SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
  ☆23Updated 4 years ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆68Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆152Updated last year
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆62Updated this week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• JackieHanLab / SenCID
  Senescent Cell Identification
  ☆46Updated last year
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆119Updated 2 months ago
• KChen-lab / METAFlux
  ☆81Updated last year
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆22Updated 7 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆113Updated 2 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆76Updated last year
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆85Updated 11 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆83Updated 9 months ago
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆88Updated this week
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆106Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆114Updated 8 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆122Updated this week
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆161Updated 2 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆137Updated 10 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• ShobiStassen / VIA
  trajectory inference
  ☆105Updated 11 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆107Updated 2 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆78Updated 3 weeks ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆69Updated last year
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago