Matrisome / MatrisomeAnalyzeRLinks
An R package for ECM molecule annotation, classification, and analysis
☆10Updated 11 months ago
Alternatives and similar repositories for MatrisomeAnalyzeR
Users that are interested in MatrisomeAnalyzeR are comparing it to the libraries listed below
Sorting:
- ☆80Updated this week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago
- A tool for semi-automatic cell type harmonization and integration☆110Updated 5 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- ☆56Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- ☆30Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- trajectory inference☆104Updated 7 months ago
- Removing empty droplets in multiome datasets☆17Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- ☆71Updated last year
- Single-Cell Clustering Assessment Framework☆105Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆65Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated last week
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- R implementation of GeneTrajectory☆63Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 7 months ago
- R package for semi-supervised single-cell data integration☆88Updated last month
- Functional Inference of Gene Regulation☆46Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- R package to access DoRothEA's regulons☆150Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago