for detecting internal tandem duplication from genome sequence data.
☆12May 16, 2019Updated 7 years ago
Alternatives and similar repositories for Genomon-ITDetector
Users that are interested in Genomon-ITDetector are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GATK4 Best Practice Nextflow Pipeline☆35Jan 18, 2018Updated 8 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 5 years ago
- Workflow for germline short variant discovery using GATK4☆12Aug 26, 2022Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- FLT3-ITD script based on in-silico extension and clustering☆14Jun 9, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Mar 31, 2025Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆56Oct 29, 2020Updated 6 years ago
- ☆27Dec 9, 2022Updated 3 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Apr 5, 2016Updated 10 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 9 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Jul 22, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- structure detection program☆18Nov 20, 2024Updated last year
- Blue Collar Bioinformatics website☆10Apr 30, 2024Updated 2 years ago
- commandline manipulation of genomic variants and NGS reads☆21Updated this week
- ☆24Oct 15, 2018Updated 8 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 9 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- ☆13Sep 18, 2017Updated 9 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- ☆11May 21, 2024Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆125Mar 15, 2026Updated 7 months ago
- An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed☆19Jun 19, 2020Updated 6 years ago
- Repository for "Multilayered VBC-score predicts sgRNAs that efficiently generate loss-of-function alleles" Michlits et al. Nature Methods…☆12Apr 10, 2020Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Mean Alterations Using Discrete Expression☆14Oct 30, 2026Updated last week
- AlfaPang builds pangenome graphs without alignments or references.☆18Oct 16, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11May 19, 2023Updated 3 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆13Jul 23, 2026Updated 3 months ago
- Downsample fastq files in an automated way☆13Aug 18, 2026Updated 2 months ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- Published methods☆15Oct 19, 2016Updated 10 years ago
- Nanopore sequencing-based episignature detection☆19Jun 10, 2026Updated 4 months ago