ken0-1n / Genomon-ITDetector
for detecting internal tandem duplication from genome sequence data.
☆11Updated 5 years ago
Alternatives and similar repositories for Genomon-ITDetector:
Users that are interested in Genomon-ITDetector are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆46Updated 5 years ago
- ☆39Updated 11 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- CN-Learn☆29Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 5 months ago
- An awk-like VCF parser☆56Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆27Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆52Updated 7 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago
- Structural variant merging tool☆49Updated 7 months ago
- CNV screening and annotation tool☆24Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago