pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs.
☆14Oct 28, 2025Updated 4 months ago
Alternatives and similar repositories for pybio
Users that are interested in pybio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆21Nov 28, 2025Updated 3 months ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 7 months ago
- cgat-flow repository☆16Sep 23, 2025Updated 6 months ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- Genome annotation pre-publication results☆26Updated this week
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- ☆18May 31, 2024Updated last year
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- cgat-apps repository☆35Apr 9, 2025Updated 11 months ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- ☆24Apr 15, 2024Updated last year
- ☆23Jun 27, 2023Updated 2 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Lightning fast Search Bar component for React using Trie! Get filtered results and suggested searches on the go!☆11Dec 3, 2022Updated 3 years ago
- ☆29Apr 18, 2023Updated 2 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Jun 23, 2025Updated 9 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- An advanced multi-agent framework for automating complex bioinformatics workflows.☆16Mar 18, 2025Updated last year
- ☆24Jul 29, 2025Updated 7 months ago
- RNA-binding protein motif analysis☆10Sep 29, 2025Updated 5 months ago
- This repository hosts my personal notes and assignments for the `2024 Complete Neo4j GraphDB Bootcamp` Udemy course.☆19Mar 20, 2024Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Feb 27, 2026Updated 3 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Core functionality of the CGAT code☆34Mar 8, 2026Updated 2 weeks ago
- ☆56Jun 12, 2025Updated 9 months ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- tspex: tissue-specificity calculator☆37Jul 4, 2023Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆27Jan 29, 2026Updated last month
- A computational workflow for exitron splicing identification☆15Aug 30, 2024Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago