Alternatives and similar repositories for pybio:

Users that are interested in pybio are comparing it to the libraries listed below

• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated 10 months ago
• gagneurlab / absplice
  ☆38Updated 6 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 9 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 10 months ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 10 months ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 2 weeks ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 2 weeks ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆35Updated this week
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆18Updated 2 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 3 weeks ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆32Updated 2 years ago
• KCCG / mity
  mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
  ☆36Updated last month
• nf-core / circdna
  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…
  ☆28Updated 2 months ago
• TRON-Bioinformatics / tronflow-hla-hd
  A Nextflow workflow for HLA typing using HLA-HD
  ☆11Updated 8 months ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆18Updated 6 months ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 3 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated 11 months ago
• bedapub / splicekit
  splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
  ☆16Updated last week
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated 10 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 5 months ago
• Xinglab / rMATS-long
  ☆28Updated 3 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• davidliwei / rnaseqmut
  RNA-Seq Mutation Detection
  ☆28Updated 3 years ago
• TRON-Bioinformatics / tronflow-mutect2
  Nextflow pipeline for Mutect2 somatic variant calling best practices
  ☆22Updated 9 months ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 6 months ago