pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs.
☆15Oct 28, 2025Updated 6 months ago
Alternatives and similar repositories for pybio
Users that are interested in pybio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆23Nov 28, 2025Updated 5 months ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 9 months ago
- cgat-flow repository☆16Sep 23, 2025Updated 7 months ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- Genome annotation pre-publication results☆27Updated this week
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- ☆18May 31, 2024Updated last year
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- cgat-apps repository☆36Apr 9, 2025Updated last year
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- ☆24Jun 27, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆16Aug 27, 2024Updated last year
- Ultra-fast 5' and 3' demultiplexer☆30Apr 23, 2024Updated 2 years ago
- Lightning fast Search Bar component for React using Trie! Get filtered results and suggested searches on the go!☆11Dec 3, 2022Updated 3 years ago
- ☆29Apr 18, 2023Updated 3 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆18Jun 23, 2025Updated 10 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Parallel Transport Unfolding Codebase☆17Jun 13, 2021Updated 4 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- An advanced multi-agent framework for automating complex bioinformatics workflows.☆16Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆24Jul 29, 2025Updated 9 months ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 7 months ago
- This repository hosts my personal notes and assignments for the `2024 Complete Neo4j GraphDB Bootcamp` Udemy course.☆19Mar 20, 2024Updated 2 years ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Apr 20, 2026Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated last year
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Core functionality of the CGAT code☆34Mar 8, 2026Updated last month
- Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme☆24Sep 4, 2020Updated 5 years ago
- ☆56Jun 12, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- Community Material Deprivation Index☆17Sep 9, 2025Updated 7 months ago
- tspex: tissue-specificity calculator☆38Jul 4, 2023Updated 2 years ago
- ☆22Nov 11, 2022Updated 3 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆30Jan 29, 2026Updated 3 months ago