pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs.
☆14Oct 28, 2025Updated 4 months ago
Alternatives and similar repositories for pybio
Users that are interested in pybio are comparing it to the libraries listed below
Sorting:
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆20Nov 28, 2025Updated 3 months ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 7 months ago
- ☆18May 31, 2024Updated last year
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 5 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- cgat-flow repository☆16Sep 23, 2025Updated 5 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- ☆18Aug 22, 2021Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- ☆24Apr 15, 2024Updated last year
- ☆23Jun 7, 2024Updated last year
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 3 months ago
- 生物信息学python代码,专注于重测序文本计算、处理☆30May 29, 2025Updated 9 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 6 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆33Oct 6, 2023Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 3 months ago
- ☆28Dec 1, 2022Updated 3 years ago
- 本仓库主要用于讨论李俊慧老师的《经济学讲义》、文章以及张五常老师的《经济解释》☆10Jun 2, 2020Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Extract Sequence from Genome According to Annotation File☆39Apr 16, 2025Updated 10 months ago
- ☆29Apr 18, 2023Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36May 2, 2023Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- .h5mu files interface for Seurat☆33Nov 28, 2023Updated 2 years ago
- ☆34Oct 6, 2025Updated 4 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- tspex: tissue-specificity calculator☆36Jul 4, 2023Updated 2 years ago
- Core functionality of the CGAT code☆34Feb 13, 2026Updated 2 weeks ago
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Yapay Zeka ve Python Programlama dersi ders notları ve kodlar☆10Jan 8, 2024Updated 2 years ago
- ☆13May 27, 2025Updated 9 months ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 4 years ago
- ☆13Aug 13, 2024Updated last year