CGATOxford / CGATPipelinesLinks
Collection of CGAT NGS Pipelines
☆43Updated 6 years ago
Alternatives and similar repositories for CGATPipelines
Users that are interested in CGATPipelines are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆69Updated 2 years ago
- Gossamer bioinformatics suite☆22Updated 8 months ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 3 years ago
- ☆38Updated 4 years ago
- ☆21Updated last week
- Battenberg R package for subclonal copynumber estimation☆89Updated last month
- Genomic Association Tester☆31Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆60Updated last month
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago
- ☆30Updated 7 years ago
- Tumor Mutational Burden☆62Updated last week
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- DCC/DAC methylation pipeline source☆56Updated 5 years ago