CGATOxford / CGATPipelinesLinks
Collection of CGAT NGS Pipelines
☆43Updated 6 years ago
Alternatives and similar repositories for CGATPipelines
Users that are interested in CGATPipelines are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- ☆72Updated 2 years ago
- ☆30Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- DCC/DAC methylation pipeline source☆56Updated 5 years ago
- Genomic Association Tester☆32Updated 2 years ago
- ☆38Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Gossamer bioinformatics suite☆22Updated 9 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- ☆18Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 2 months ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆60Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆47Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- ☆78Updated 11 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago