cgab-ncc / FIREVATView external linksLinks
FInding REliable Variants without ArTifacts
☆23Nov 18, 2022Updated 3 years ago
Alternatives and similar repositories for FIREVAT
Users that are interested in FIREVAT are comparing it to the libraries listed below
Sorting:
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 weeks ago
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Oct 15, 2025Updated 4 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆19Jan 8, 2024Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- ☆17Nov 23, 2021Updated 4 years ago
- A tool for timing complex copy number gains in cancer.☆20Dec 4, 2025Updated 2 months ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆176Feb 1, 2026Updated 2 weeks ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 4 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Aug 1, 2024Updated last year
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Apr 5, 2016Updated 9 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated 2 weeks ago
- VarDict Java port☆138Jan 5, 2024Updated 2 years ago
- CWL for GDC DNASeq workflows☆23Feb 6, 2026Updated last week
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 5 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Jan 29, 2026Updated 2 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Jul 26, 2024Updated last year
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆117Feb 8, 2026Updated last week
- Overview of GDC Harmonization Workflows☆36May 16, 2023Updated 2 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆28Mar 15, 2017Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Aug 22, 2021Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- Dockstore implementation of CGP core WGS analysis☆30Jun 8, 2020Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Dec 5, 2019Updated 6 years ago
- Copy number calling and variant classification using targeted short read sequencing☆142Aug 28, 2025Updated 5 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year