PapenfussLab / socratesLinks
☆16Updated 9 years ago
Alternatives and similar repositories for socrates
Users that are interested in socrates are comparing it to the libraries listed below
Sorting:
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- ☆46Updated 6 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 7 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 6 years ago