PapenfussLab / socrates
☆16Updated 8 years ago
Alternatives and similar repositories for socrates:
Users that are interested in socrates are comparing it to the libraries listed below
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆46Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- ☆20Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last week
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago