fls-bioinformatics-core / galaxy-tools
FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
☆14Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for galaxy-tools
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 9 years ago
- cache packages permanently☆12Updated 4 months ago
- Turn Galaxy Workflows into standalone scripts.☆9Updated last year
- Awesome resources related to Galaxy project☆11Updated 2 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- This project has moved and will no longer be edited here. New link ->☆11Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 3 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- ☆13Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆25Updated 2 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Tools for bam file processing☆55Updated 9 years ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated 8 months ago
- ☆12Updated 2 years ago
- Test data for MultiQC.☆20Updated last week
- ☆35Updated last month
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year