ARUP-NGS / BMFtoolsLinks
Barcoded Molecular Families
☆22Updated 8 years ago
Alternatives and similar repositories for BMFtools
Users that are interested in BMFtools are comparing it to the libraries listed below
Sorting:
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- ☆20Updated 8 years ago
- NGS duplicate marking☆19Updated 4 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆19Updated last week
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- ☆29Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago