🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.
☆45Aug 15, 2025Updated 8 months ago
Alternatives and similar repositories for vcf-reformatter
Users that are interested in vcf-reformatter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 7 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆23Apr 1, 2026Updated 2 weeks ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 3 months ago
- ☆32Aug 2, 2022Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 11 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- ☆21Mar 24, 2026Updated 3 weeks ago
- Admiral Package Extension for Pediatric Clinical Trials☆14Updated this week
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 3 months ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated last month
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 4 months ago
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated last month
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆18Jan 29, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆89Mar 27, 2026Updated 3 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- A list of software for pangenomics☆182Mar 24, 2026Updated 3 weeks ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 9 months ago
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 11 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 3 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Apr 11, 2026Updated last week
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago