🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.
☆47Aug 15, 2025Updated 10 months ago
Alternatives and similar repositories for vcf-reformatter
Users that are interested in vcf-reformatter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 9 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆25Apr 1, 2026Updated 3 months ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- ☆32Aug 2, 2022Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- ☆21Jun 22, 2026Updated 2 weeks ago
- Admiral Package Extension for Pediatric Clinical Trials☆14Updated this week
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 5 months ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- Toolkit for calling structural variants using short or long reads☆115Jun 15, 2026Updated 3 weeks ago
- Clonal structure identification through penalizing pairwise differences☆11May 14, 2026Updated last month
- Kmer Analysis of Pileups for Genotyping☆40Mar 6, 2026Updated 4 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- ☆18Jan 29, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆14Jan 27, 2023Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- A list of software for pangenomics☆193Updated this week
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆24Jan 21, 2026Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆35Jun 12, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Tools for merging Tandem Repeat VCF files☆38Apr 30, 2025Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Updated this week
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago