Alternatives and similar repositories for tes

Users that are interested in tes are comparing it to the libraries listed below

• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆45Updated this week
• stjude-rust-labs / wdl
  Rust crates for working with Workflow Description Language (WDL) documents.
  ☆62Updated 2 months ago
• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆104Updated this week
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆21Updated 7 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 5 months ago
• stjude-rust-labs / omics
  Foundations for the Rust omics ecosystem.
  ☆12Updated last month
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆12Updated 4 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated last month
• jakob-schuster / matchbox
  A flexible processor for sequencing reads
  ☆21Updated this week
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 8 months ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆48Updated last week
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆23Updated last week
• MatthewRalston / kmerdb
  Python CLI for alignment-free genomics.
  ☆12Updated last week
• trytoolchest / toolchest-client-python
  Toolchest Python client
  ☆15Updated 2 years ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• pepkit / looper
  Modular job submitter for arbitrary pipelines or commands.
  ☆24Updated last month
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 3 years ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆84Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆30Updated 3 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated last month
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 10 months ago
• miniwdl-ext / miniwdl-aws
  Extends miniwdl to run workflows on AWS Batch & EFS
  ☆22Updated last year
• BioRadOpenSource / ish
  Alignment-based filtering CLI tool
  ☆61Updated last month
• luizirber / phd
  ☆14Updated 5 years ago
• flalom / vcf-reformatter
  🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …
  ☆44Updated 4 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 6 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• varfish-org / hgvs-rs
  A port of biocommons/hgvs to the Rust programming language
  ☆15Updated 2 weeks ago