PyProphet / pyprophetLinks
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
☆30Updated 2 weeks ago
Alternatives and similar repositories for pyprophet
Users that are interested in pyprophet are comparing it to the libraries listed below
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Updated 3 weeks ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 4 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Updated 3 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Updated 2 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆100Updated this week
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 7 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆44Updated last week
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Updated 3 years ago
- Python package for efficient mass spectrometry data processing and visualization☆161Updated last month
- A collection of available Python tools for Proteomics analysis☆67Updated 6 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆123Updated last month
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- A tool for summarizing open search results☆16Updated last month
- Deep learning framework for proteomics☆142Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆30Updated last month
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- Instrument Application Programming Interface☆51Updated 3 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 11 months ago
- ☆15Updated 3 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆43Updated 3 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆52Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆65Updated last week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated last month
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆105Updated this week