PyProphet / pyprophetLinks
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
☆30Updated last month
Alternatives and similar repositories for pyprophet
Users that are interested in pyprophet are comparing it to the libraries listed below
Sorting:
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆63Updated 6 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 4 years ago
- Python package for efficient mass spectrometry data processing and visualization☆159Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last month
- Deep learning framework for proteomics☆136Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last month
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆43Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆142Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated last week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 4 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆180Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 2 weeks ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Updated last week
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆42Updated last week
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆34Updated 7 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 3 weeks ago
- Spectral library searching using approximate nearest neighbor techniques.☆46Updated 6 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆120Updated last week
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week