Navigation links (and brief descriptions) to my repositories.
☆13Nov 25, 2025Updated 8 months ago
Alternatives and similar repositories for Start_Here
Users that are interested in Start_Here are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆34Jul 3, 2026Updated last month
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆14Jul 1, 2026Updated last month
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bulk and single-cell Multi-Omics ground truth Simulator in R☆12Feb 10, 2026Updated 6 months ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Jul 21, 2026Updated 3 weeks ago
- Python module for lipidomics LC MS/MS data analysis☆20Jun 27, 2024Updated 2 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- A Comet-based, best practices proteomics pipeline.☆40Mar 21, 2024Updated 2 years ago
- A label free quantification tool.☆20Jan 13, 2026Updated 6 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆86Jan 6, 2022Updated 4 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Updated this week
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated 3 weeks ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Jul 18, 2026Updated 3 weeks ago
- A library for QC report based on MultiQC framework☆34Jul 27, 2026Updated 2 weeks ago
- PTa Analysis TOolkit☆19Jun 9, 2026Updated 2 months ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- Python client for PRIDE Archive Rest API.☆41Jul 29, 2026Updated last week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Jul 2, 2026Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆46Jul 30, 2026Updated last week
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆15Jan 9, 2025Updated last year
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 9 months ago
- Create synthetic DIA LC-MS/MS for proteomics experiments☆19Mar 16, 2023Updated 3 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Jun 18, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11Feb 4, 2025Updated last year
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆19Sep 7, 2023Updated 2 years ago
- Example python-based plugins for iolite4.☆26Aug 4, 2026Updated last week
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆21Jul 6, 2023Updated 3 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 months ago
- ☆27Sep 26, 2024Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago