A community dedicated to education of computer coding applied to mass spectrometry applications.
☆51Jul 18, 2025Updated last year
Alternatives and similar repositories for MassSpecCodingClub
Users that are interested in MassSpecCodingClub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Interactive Peptide Spectral Annotator☆23Jun 9, 2020Updated 6 years ago
- Differential Expression Analysis tool box R lang package for omics data☆46Jul 10, 2026Updated last week
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆20Jun 8, 2026Updated last month
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 4 months ago
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Jan 27, 2022Updated 4 years ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆41Jun 2, 2026Updated last month
- A programmable and modular LC/MS simulator in Python☆25Jul 3, 2026Updated 2 weeks ago
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated 11 months ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆34Jul 3, 2026Updated 2 weeks ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆50Updated this week
- Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments☆15Apr 29, 2026Updated 2 months ago
- ☆11Nov 30, 2024Updated last year
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆36Jun 13, 2026Updated last month
- Quantitative features for mass spectrometry data☆29May 3, 2026Updated 2 months ago
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- R package for functionally scoring phosphorylation sites☆22Nov 3, 2019Updated 6 years ago
- Python package for efficient mass spectrometry data processing and visualization☆168Mar 5, 2026Updated 4 months ago
- HUPO-PSI Standardized peptidoform notation☆25Jun 9, 2026Updated last month
- ☆34Updated this week
- Goslin is the Grammar on succinct lipid nomenclature.☆13Jun 18, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A cross-platform proteomics data analysis suite☆311Updated this week
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Python notebooks for teaching analytical chemistry☆15May 29, 2026Updated last month
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆20Jun 12, 2024Updated 2 years ago
- Web Molecular Toolkit: cheminformatics functionality in TypeScript☆37Jun 28, 2026Updated 3 weeks ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆22May 4, 2026Updated 2 months ago
- Repo hosting the MetFrag website☆11Apr 6, 2026Updated 3 months ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆11Mar 17, 2025Updated last year
- RawQuant is a Python package for extracting scan meta data and quantification values from Thermo .raw files.☆11Jan 4, 2019Updated 7 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 3 months ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Apr 17, 2026Updated 3 months ago
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 5 months ago
- Access Orbitrap data in R lang using C# .NET assembly - bioconductor package☆62Feb 10, 2026Updated 5 months ago
- Tools for treatment high res mass spectrum of natural organic matter samples☆13Aug 4, 2023Updated 2 years ago