michaelmarty / MassSpecCodingClub

Related projects ⓘ

Alternatives and complementary repositories for MassSpecCodingClub

• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last year
• mafreitas / tdf2mzml
  ☆25Updated last year
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆42Updated this week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆76Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆44Updated last month
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆54Updated 9 months ago
• PNNL-Comp-Mass-Spec / Thermo-Raw-File-Reader
  .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
  ☆38Updated 2 months ago
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆68Updated 3 years ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆38Updated this week
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆53Updated 4 months ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆78Updated last month
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆28Updated last week
• gtluu / timsconvert
  ☆32Updated last month
• antonvsdata / notame
  An R package for non-targeted LC-MS metabolomics
  ☆16Updated 2 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆33Updated this week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated last week
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆32Updated last month
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated last month
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆68Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated 11 months ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• thermofisherlsms / RawFileReader
  ☆50Updated last month
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆25Updated this week
• chhh / batmass
  Mass spectrometry data visualization
  ☆36Updated 3 years ago
• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆39Updated last week
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated 4 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆18Updated 2 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• rickhelmus / patRoon
  Workflow solutions for mass-spectrometry based non-target analysis.
  ☆64Updated this week