Documentation is available here:
☆26Jun 10, 2026Updated 2 months ago
Alternatives and similar repositories for FragPipe-Analyst
Users that are interested in FragPipe-Analyst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 5 months ago
- R-Shiny GUI integrated with the MSstats package family☆20Updated this week
- A library for QC report based on MultiQC framework☆34Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- A cross-platform proteomics data analysis suite☆314Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆82Updated this week
- Omics Data Analysis Tools☆14Nov 26, 2024Updated last year
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated 11 months ago
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated this week
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆28Mar 30, 2026Updated 4 months ago
- DEqMS is a tool for quantitative proteomic analysis☆29Apr 16, 2025Updated last year
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for summarizing open search results☆16May 5, 2026Updated 3 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Jul 18, 2026Updated 3 weeks ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Jul 21, 2026Updated 3 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆71Jan 6, 2026Updated 7 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆14Jul 1, 2026Updated last month
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆471Jun 30, 2026Updated last month
- Python client for PRIDE Archive Rest API.☆41Jul 29, 2026Updated 2 weeks ago
- quantms workflow for DIANN tool including DIA and DDA analysis☆18Updated this week
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Aug 7, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Computational analysis for mass spectrometry-based proteomics data☆10Apr 25, 2016Updated 10 years ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated last month
- Methods for label-free mass spectrometry proteomics☆15May 13, 2026Updated 3 months ago
- Report processing and protein quantification for MS-based proteomics☆56Jun 29, 2023Updated 3 years ago
- ☆35Jul 16, 2026Updated 3 weeks ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- Democratizing ML in proteomics☆57Updated this week
- A collection of available Python tools for Proteomics analysis☆68Jan 31, 2026Updated 6 months ago
- MaxQuant and Perseus Bug Reporting☆10Mar 19, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆45Jul 20, 2026Updated 3 weeks ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆42Jul 26, 2026Updated 2 weeks ago
- R package - MSstats☆101Aug 6, 2026Updated last week
- The repo for LFQ-Analyst☆31Aug 7, 2024Updated 2 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 2 months ago