Alternatives and similar repositories for FragPipe-Analyst

Users that are interested in FragPipe-Analyst are comparing it to the libraries listed below

• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated last week
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated 2 weeks ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 3 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 9 months ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated last month
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated last year
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 3 months ago
• dnusinow / cRomppass
  Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
  ☆10Updated 9 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• pFindStudio / pFind3
  ☆27Updated 4 months ago
• jpquast / protti
  Picotti lab data analysis package.
  ☆63Updated last month
• tidymass / tidymass
  tidymass
  ☆54Updated 3 weeks ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆23Updated 7 months ago
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆25Updated 2 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆27Updated 2 years ago
• mathiaskalxdorf / IceR
  Quantitative proteomics workflow
  ☆15Updated 2 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆48Updated this week
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated last month
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• shuzhao-li-lab / espol-workshop
  5-day workshop on Metabolomics and Data Analysis
  ☆16Updated 5 years ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆21Updated this week
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last week
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆25Updated 6 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆83Updated last week
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆19Updated 4 months ago
• PayneLab / ProteomicsEducation
  ☆33Updated last week