Documentation is available here:
☆28Jun 10, 2026Updated 4 months ago
Alternatives and similar repositories for FragPipe-Analyst
Users that are interested in FragPipe-Analyst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Aug 21, 2026Updated 2 months ago
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 7 months ago
- R-Shiny GUI integrated with the MSstats package family☆21Oct 23, 2026Updated last week
- A cross-platform proteomics data analysis suite☆329Oct 24, 2026Updated last week
- A library for QC report based on MultiQC framework☆35Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆133Oct 22, 2026Updated last week
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆46Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆69Oct 12, 2026Updated 3 weeks ago
- DEqMS is a tool for quantitative proteomic analysis☆31Apr 16, 2025Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆24Updated this week
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- Quantitative features for mass spectrometry data☆30Sep 3, 2026Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆89Oct 9, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆53Updated this week
- A collection of available Python tools for Proteomics analysis☆70Jan 31, 2026Updated 9 months ago
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated last year
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆493Sep 16, 2026Updated last month
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆28Mar 30, 2026Updated 7 months ago
- Repository for mzIdentML and the corresponding examples☆27Oct 19, 2026Updated 2 weeks ago
- Differential Expression Analysis tool box R lang package for omics data☆48Oct 26, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆136Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated 2 months ago
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- Omics Data Analysis Tools☆15Nov 26, 2024Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated 2 months ago
- A command-line tool for saving one line notes in plain text files.☆14Jan 17, 2026Updated 9 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆50Updated this week
- Python module for lipidomics LC MS/MS data analysis☆22Jun 27, 2024Updated 2 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆253Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Analysis platform for large-scale dose-dependent data☆36Nov 25, 2025Updated 11 months ago
- Report processing and protein quantification for MS-based proteomics☆57Jun 29, 2023Updated 3 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆16Oct 13, 2026Updated 2 weeks ago
- A tool for summarizing open search results☆17Updated this week
- Interpretation of proteomics identification results☆57Sep 28, 2026Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆32Jul 16, 2026Updated 3 months ago
- LIMPA DAVIS Proteomics Pipeline☆22Updated this week