MonashProteomics / FragPipe-Analyst

Related projects ⓘ

Alternatives and complementary repositories for FragPipe-Analyst

• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆68Updated 2 years ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆31Updated last month
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆42Updated 2 weeks ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆36Updated last year
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆76Updated 2 weeks ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆44Updated 6 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated last week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆33Updated this week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆22Updated last month
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆22Updated 5 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆40Updated 3 weeks ago
• dnusinow / cRomppass
  Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
  ☆9Updated 9 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆27Updated 10 months ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆77Updated 7 months ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆13Updated this week
• Vitek-Lab / MSstats
  R package - MSstats
  ☆74Updated this week
• IFIproteomics / LFQbench
  ☆24Updated last year
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆31Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆54Updated 6 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 3 years ago
• statisticalbiotechnology / diffacto
  ☆13Updated 8 months ago
• pFindStudio / pFind3
  ☆24Updated 5 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆26Updated last week
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆26Updated last year
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆107Updated 5 months ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆38Updated 5 months ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆35Updated 8 months ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆60Updated this week