D3 Sankey Network Graphs from R
☆71Feb 27, 2026Updated last week
Alternatives and similar repositories for sankeyD3
Users that are interested in sankeyD3 are comparing it to the libraries listed below
Sorting:
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 3 months ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 5 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated 11 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 5 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- Naming avoiding ambiguity automatically assigning valid identifiers☆32Mar 18, 2021Updated 4 years ago
- ☆15Jul 5, 2018Updated 7 years ago
- ☆13May 27, 2025Updated 9 months ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- ☆19Jan 16, 2024Updated 2 years ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Sorenson Impact Package☆13Nov 4, 2021Updated 4 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated last week
- An R package for network centrality☆49Sep 23, 2025Updated 5 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 3 months ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- visualising sequence similarity with Circos☆41Jul 1, 2019Updated 6 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Unjoin data frames☆12May 13, 2020Updated 5 years ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated last month
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago