rhierbaps: R implementation of hierBAPS
☆37Feb 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for rhierbaps
Users that are interested in rhierbaps are comparing it to the libraries listed below
Sorting:
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆69Feb 23, 2026Updated 2 weeks ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 7 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated last month
- Extract metadata from biosamples in NCBI☆17Apr 12, 2021Updated 4 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- A set of scripts for calculating pairwise SNP distance☆44Feb 19, 2026Updated 2 weeks ago
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120May 21, 2024Updated last year
- Align multiple amino acid or nucleotide sequences.☆77Sep 17, 2020Updated 5 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins