Educational Notes on Molecular Modeling
☆13Nov 19, 2020Updated 5 years ago
Alternatives and similar repositories for MolModEdu
Users that are interested in MolModEdu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jun 11, 2024Updated 2 years ago
- The App Store for VMD extensions.☆14Jan 14, 2023Updated 3 years ago
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 2 years ago
- Scoring methods for predicting the DDG upon protein mutation☆17Feb 20, 2023Updated 3 years ago
- For the purpose of post progressing of MD carried by gromacs☆24Jul 2, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆49May 22, 2026Updated last month
- A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling metho…☆24Sep 26, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- development repository for PyInteraph2☆23Jun 18, 2026Updated last month
- Map atomistic trajectories to CG Martini level fast and compute interactions☆17Jun 1, 2026Updated last month
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- An application for configuring and running simulations with OpenMM☆81Oct 30, 2025Updated 8 months ago
- Run Docker apps on a BOINC project (like Cosmology@Home, etc...)☆12Jan 18, 2019Updated 7 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Data files and scripts for the ASU PHY494 class. Will be updated as we go along.☆10Jan 6, 2022Updated 4 years ago
- A workflow showing how to combine Inkscape and LaTeX to obtain figures that match your document better☆29May 9, 2021Updated 5 years ago
- pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of str…☆28Aug 20, 2020Updated 5 years ago
- ⚠️ NOTICE: This starter kit was used for 2019 challenge and has been deprecated in favour of 2020 Flatland challenge's starter kit presen…☆20Jun 9, 2020Updated 6 years ago
- ☆12May 20, 2019Updated 7 years ago
- Adaptive string method implementation in AmberTools23 and Amber22☆15Jan 7, 2025Updated last year
- ☆12Sep 4, 2021Updated 4 years ago
- Prediction of protein melting temperatures directly from sequences☆14Apr 16, 2024Updated 2 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 5 years ago
- find clusters of different intrinsic dimension☆11Feb 16, 2024Updated 2 years ago
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆29Jun 16, 2026Updated last month
- ☆14Jun 18, 2026Updated last month
- The repository with the tutorial on how to run MD simulations in python☆35Mar 30, 2022Updated 4 years ago
- Python for research, Course 2020 Autumn☆12Sep 4, 2021Updated 4 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Apr 26, 2026Updated 2 months ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 5 years ago
- Commodore 64 BASIC/PRG tools☆16Jan 3, 2024Updated 2 years ago
- An open source cross-platform software for the computation of in solution and precipitation chemical equilibria☆16Apr 16, 2026Updated 3 months ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- The Biochemical Library (BCL) integrates traditional small molecule cheminformatics tools with machine learning-based quantitative struct…☆37Feb 14, 2024Updated 2 years ago
- ☆12May 3, 2025Updated last year
- Tachyon library, written by John Stone☆15Sep 5, 2019Updated 6 years ago